miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23836 3' -58.4 NC_005261.1 + 3654 0.66 0.795385
Target:  5'- aGCGCGUcuGGAgcgcaggccGCGGCCGgcaGGCCgCGGCc -3'
miRNA:   3'- -UGUGCA--CUU---------UGCCGGC---UCGGgGUCGc -5'
23836 3' -58.4 NC_005261.1 + 109039 0.66 0.795385
Target:  5'- gGCGCGcagccgcGCGGCCGccaGGUagCCCAGCGg -3'
miRNA:   3'- -UGUGCacuu---UGCCGGC---UCG--GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 130854 0.66 0.795385
Target:  5'- cGCGCGcGcc-CGGCCGGGCgCC-GCGg -3'
miRNA:   3'- -UGUGCaCuuuGCCGGCUCGgGGuCGC- -5'
23836 3' -58.4 NC_005261.1 + 28839 0.66 0.795385
Target:  5'- cCGCGgcUGAGGCGGCCGucguGGCCgCCGcccuugaggcuGCGg -3'
miRNA:   3'- uGUGC--ACUUUGCCGGC----UCGG-GGU-----------CGC- -5'
23836 3' -58.4 NC_005261.1 + 33779 0.66 0.795385
Target:  5'- cCGCGgcGAGC-GCUGGGCCCCGcGCGg -3'
miRNA:   3'- uGUGCacUUUGcCGGCUCGGGGU-CGC- -5'
23836 3' -58.4 NC_005261.1 + 1065 0.66 0.795385
Target:  5'- gGCGCGgGggGCuGGCCccGCUCCAGgGc -3'
miRNA:   3'- -UGUGCaCuuUG-CCGGcuCGGGGUCgC- -5'
23836 3' -58.4 NC_005261.1 + 56144 0.66 0.795385
Target:  5'- gGCGCGggccGAggguggcggcAGCGGCgGGGCCCgCGGgGa -3'
miRNA:   3'- -UGUGCa---CU----------UUGCCGgCUCGGG-GUCgC- -5'
23836 3' -58.4 NC_005261.1 + 58992 0.66 0.795385
Target:  5'- cCACGgGcgGCGgugcGCCGGGCucgCCCAGCGg -3'
miRNA:   3'- uGUGCaCuuUGC----CGGCUCG---GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 122139 0.66 0.795385
Target:  5'- uGCAgGUGGuggugcACGGCCGA-CgCCAGCu -3'
miRNA:   3'- -UGUgCACUu-----UGCCGGCUcGgGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 53968 0.66 0.795385
Target:  5'- uCGgGUGGcaaaagAGCGcGgCGAGCUCCAGCGc -3'
miRNA:   3'- uGUgCACU------UUGC-CgGCUCGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 75816 0.66 0.795385
Target:  5'- cGCugGUGcccggcGCGGCCGcGCCCgGGg- -3'
miRNA:   3'- -UGugCACuu----UGCCGGCuCGGGgUCgc -5'
23836 3' -58.4 NC_005261.1 + 125666 0.66 0.794492
Target:  5'- aGCGCGUcauacgugccgccGAAugGguuuGCCGGGCuuggCCCGGCGa -3'
miRNA:   3'- -UGUGCA-------------CUUugC----CGGCUCG----GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 28187 0.66 0.792699
Target:  5'- uGCGCGccGAAgccgGCGGCCucgccgccgcugccGcGGCCCCAGCu -3'
miRNA:   3'- -UGUGCa-CUU----UGCCGG--------------C-UCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 124981 0.66 0.791801
Target:  5'- cGCGCGgggGAAacugcugcgcauacACGGuCCGGGCCgugcgcuCCAGCa -3'
miRNA:   3'- -UGUGCa--CUU--------------UGCC-GGCUCGG-------GGUCGc -5'
23836 3' -58.4 NC_005261.1 + 38915 0.66 0.79
Target:  5'- gGCGCGcgGGcccgcgcgccaagccGGCGGCCGGGCgggCCgCGGCGc -3'
miRNA:   3'- -UGUGCa-CU---------------UUGCCGGCUCG---GG-GUCGC- -5'
23836 3' -58.4 NC_005261.1 + 19955 0.66 0.786383
Target:  5'- -gGgGUGggGCGGCCucGGCUgCGGCa -3'
miRNA:   3'- ugUgCACuuUGCCGGc-UCGGgGUCGc -5'
23836 3' -58.4 NC_005261.1 + 136607 0.66 0.786383
Target:  5'- -aGCGUGGAGCGGCgCGcgcGCgCCgagGGCGg -3'
miRNA:   3'- ugUGCACUUUGCCG-GCu--CGgGG---UCGC- -5'
23836 3' -58.4 NC_005261.1 + 47648 0.66 0.786383
Target:  5'- cCGCGUccuccucGACGGCC-AGCCgCAGCGc -3'
miRNA:   3'- uGUGCAcu-----UUGCCGGcUCGGgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 117718 0.66 0.786383
Target:  5'- cGCGCGggcccGcAAGCGGCCGcGCgCUGGCGc -3'
miRNA:   3'- -UGUGCa----C-UUUGCCGGCuCGgGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 59480 0.66 0.786383
Target:  5'- aGCGCc-GgcGCGGCCGccGCgCCAGCGg -3'
miRNA:   3'- -UGUGcaCuuUGCCGGCu-CGgGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.