Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23836 | 5' | -53 | NC_005261.1 | + | 82716 | 0.67 | 0.923217 |
Target: 5'- --gAGCAGGcaGUccacGCCGUCcAGCCGCg -3' miRNA: 3'- aagUCGUCCaaCAu---CGGCAG-UUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 80379 | 0.67 | 0.91118 |
Target: 5'- gUUCuGCAGcGcgaaagUGUGGCCGUCGcUCACa -3' miRNA: 3'- -AAGuCGUC-Ca-----ACAUCGGCAGUuGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 71545 | 0.69 | 0.844571 |
Target: 5'- cUCGcGCAuGGUcgaguacaUGUGGCUGUCcAGCCGCg -3' miRNA: 3'- aAGU-CGU-CCA--------ACAUCGGCAG-UUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 70647 | 0.66 | 0.957102 |
Target: 5'- -gCGGCgcugAGGUUcGgcGCCG-CGGCCGCg -3' miRNA: 3'- aaGUCG----UCCAA-CauCGGCaGUUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 69667 | 0.69 | 0.852913 |
Target: 5'- -gCGGCuGGggGUGGCCGgcaUCAcGCCGCc -3' miRNA: 3'- aaGUCGuCCaaCAUCGGC---AGU-UGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 66027 | 0.66 | 0.957102 |
Target: 5'- -cCGGCGcGUcGUAGUCGgCGGCCACg -3' miRNA: 3'- aaGUCGUcCAaCAUCGGCaGUUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 62141 | 0.66 | 0.944134 |
Target: 5'- gUCAGCAGGUUGgGGa--UCAGCgACa -3' miRNA: 3'- aAGUCGUCCAACaUCggcAGUUGgUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 59916 | 0.67 | 0.908648 |
Target: 5'- --gAGCAGGUcgacgagcucGCCGUCGGCCAUc -3' miRNA: 3'- aagUCGUCCAacau------CGGCAGUUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 58681 | 0.71 | 0.730519 |
Target: 5'- -aCGGCAGGagGcccgGGCCGUCAgggcgcGCCGCu -3' miRNA: 3'- aaGUCGUCCaaCa---UCGGCAGU------UGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 50127 | 0.72 | 0.667298 |
Target: 5'- -cCAGCAGGUccacaagcUGUgcguuGGCCGUCGcguccaucGCCACa -3' miRNA: 3'- aaGUCGUCCA--------ACA-----UCGGCAGU--------UGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 42630 | 0.69 | 0.844571 |
Target: 5'- -cCAGCGGGgacucGGCCGccgCGGCCGCg -3' miRNA: 3'- aaGUCGUCCaaca-UCGGCa--GUUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 39974 | 0.67 | 0.91118 |
Target: 5'- cUCAGCGGGUUGcgcgcGCCGcCGGCgUGCg -3' miRNA: 3'- aAGUCGUCCAACau---CGGCaGUUG-GUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 38612 | 0.66 | 0.944134 |
Target: 5'- --uGGCGGGUguUGGCCG-CGGCCGa -3' miRNA: 3'- aagUCGUCCAacAUCGGCaGUUGGUg -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 33941 | 0.66 | 0.957102 |
Target: 5'- -cCAGCAGGaUGgcGCCGcCugUCGCu -3' miRNA: 3'- aaGUCGUCCaACauCGGCaGuuGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 23944 | 0.72 | 0.699188 |
Target: 5'- -gCGGCGGGUUcggGGUCGUCGGCaCGCg -3' miRNA: 3'- aaGUCGUCCAAca-UCGGCAGUUG-GUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 23594 | 0.7 | 0.770931 |
Target: 5'- -gCGGCGGuGgugGUGGCUGUCGccGCCGCu -3' miRNA: 3'- aaGUCGUC-Caa-CAUCGGCAGU--UGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 17143 | 0.74 | 0.592228 |
Target: 5'- -cCGGCGGGUcgacGUAGaCCGUCAcCCGCg -3' miRNA: 3'- aaGUCGUCCAa---CAUC-GGCAGUuGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 8504 | 0.67 | 0.91733 |
Target: 5'- -cCAGCGGGgg--GGCCGgcCAAUCGCa -3' miRNA: 3'- aaGUCGUCCaacaUCGGCa-GUUGGUG- -5' |
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23836 | 5' | -53 | NC_005261.1 | + | 627 | 0.66 | 0.957102 |
Target: 5'- ---cGCAGGggaUGUGGCgG-CGGCCGCc -3' miRNA: 3'- aaguCGUCCa--ACAUCGgCaGUUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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