miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23837 3' -64.2 NC_005261.1 + 117634 0.66 0.549278
Target:  5'- -cCGCGCCggGcCCGCGccgcGCCCCCc -3'
miRNA:   3'- gcGCGCGGaaC-GGCGCcuu-CGGGGGc -5'
23837 3' -64.2 NC_005261.1 + 57610 0.66 0.549278
Target:  5'- gGCgGCGCac-GCCGCGc-AGCCCuCCGg -3'
miRNA:   3'- gCG-CGCGgaaCGGCGCcuUCGGG-GGC- -5'
23837 3' -64.2 NC_005261.1 + 40771 0.66 0.549278
Target:  5'- aGUGCcauggagaccaGCCc-GCCGCGcAGGCUCCCGg -3'
miRNA:   3'- gCGCG-----------CGGaaCGGCGCcUUCGGGGGC- -5'
23837 3' -64.2 NC_005261.1 + 56145 0.66 0.549278
Target:  5'- gCGCGgGCCgaggGUgGCGGcagcggcgGGGCCCgCGg -3'
miRNA:   3'- -GCGCgCGGaa--CGgCGCC--------UUCGGGgGC- -5'
23837 3' -64.2 NC_005261.1 + 73795 0.66 0.549278
Target:  5'- gCGCGCGgCggucgGCgCGCaGAAGCCgcgCCCGc -3'
miRNA:   3'- -GCGCGCgGaa---CG-GCGcCUUCGG---GGGC- -5'
23837 3' -64.2 NC_005261.1 + 92752 0.66 0.549278
Target:  5'- aGCGcCGCCcgcGCCGCucGGAccgGGCCgagCCCGg -3'
miRNA:   3'- gCGC-GCGGaa-CGGCG--CCU---UCGG---GGGC- -5'
23837 3' -64.2 NC_005261.1 + 50825 0.66 0.549278
Target:  5'- cCGCGCGgCUUggcGCCGCGagcuGGCgCCUGu -3'
miRNA:   3'- -GCGCGCgGAA---CGGCGCcu--UCGgGGGC- -5'
23837 3' -64.2 NC_005261.1 + 51000 0.66 0.549278
Target:  5'- gGCGCGUgggcGCgGCGGGAGCUcggcgagcgccaCCCGg -3'
miRNA:   3'- gCGCGCGgaa-CGgCGCCUUCGG------------GGGC- -5'
23837 3' -64.2 NC_005261.1 + 15223 0.66 0.549278
Target:  5'- gGCuCGCCgaGCCgGCGuuGAGGCCCCg- -3'
miRNA:   3'- gCGcGCGGaaCGG-CGC--CUUCGGGGgc -5'
23837 3' -64.2 NC_005261.1 + 89762 0.66 0.549278
Target:  5'- aGCugaaCGCCgugGCCGaGGAGGCCCUgCGg -3'
miRNA:   3'- gCGc---GCGGaa-CGGCgCCUUCGGGG-GC- -5'
23837 3' -64.2 NC_005261.1 + 106894 0.66 0.549278
Target:  5'- uGCaGCGCCUgcgucguccgcGCCGCGGcgcgcugcaGGGCCgCCa -3'
miRNA:   3'- gCG-CGCGGAa----------CGGCGCC---------UUCGGgGGc -5'
23837 3' -64.2 NC_005261.1 + 120863 0.66 0.548327
Target:  5'- uGUGUGCUUUcGCguccuuuuuuaauCGCGGgcGCCCCUa -3'
miRNA:   3'- gCGCGCGGAA-CG-------------GCGCCuuCGGGGGc -5'
23837 3' -64.2 NC_005261.1 + 104257 0.66 0.543584
Target:  5'- uCGCGCGCgagcGCCGCGGucucggcggcugcgcGGGCCUCg- -3'
miRNA:   3'- -GCGCGCGgaa-CGGCGCC---------------UUCGGGGgc -5'
23837 3' -64.2 NC_005261.1 + 131978 0.66 0.539799
Target:  5'- cCGCGCggccaccagGCCUUcgcaGUCGCGGAcggcgacaacugGGCCgCCGu -3'
miRNA:   3'- -GCGCG---------CGGAA----CGGCGCCU------------UCGGgGGC- -5'
23837 3' -64.2 NC_005261.1 + 49268 0.66 0.539799
Target:  5'- gGCGCGCacguCCGCGaggaaggcgcaGAAGCCCgCGg -3'
miRNA:   3'- gCGCGCGgaacGGCGC-----------CUUCGGGgGC- -5'
23837 3' -64.2 NC_005261.1 + 105714 0.66 0.539799
Target:  5'- aGCGaCGUC-UGCCGCGGcuGCCacaCGg -3'
miRNA:   3'- gCGC-GCGGaACGGCGCCuuCGGgg-GC- -5'
23837 3' -64.2 NC_005261.1 + 121076 0.66 0.539799
Target:  5'- gCGCgGCGCCggcgGCCGCcagcGCCUCCa -3'
miRNA:   3'- -GCG-CGCGGaa--CGGCGccuuCGGGGGc -5'
23837 3' -64.2 NC_005261.1 + 34419 0.66 0.539799
Target:  5'- gGCGCGCg--GcCCGCGccuGCCCCUGc -3'
miRNA:   3'- gCGCGCGgaaC-GGCGCcuuCGGGGGC- -5'
23837 3' -64.2 NC_005261.1 + 45406 0.66 0.539799
Target:  5'- uGuCGUGCC-UGCUGCGGcgccuGCgCCCGc -3'
miRNA:   3'- gC-GCGCGGaACGGCGCCuu---CGgGGGC- -5'
23837 3' -64.2 NC_005261.1 + 98197 0.66 0.539799
Target:  5'- gGCGCGgCggGCaGCGGgcGCCgCCa -3'
miRNA:   3'- gCGCGCgGaaCGgCGCCuuCGGgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.