miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 5' -56.5 NC_005261.1 + 13666 0.7 0.683711
Target:  5'- -cCGcCGCGgggggggcGCGGGGCGCgcgGGCGUGg -3'
miRNA:   3'- caGCaGCGCa-------UGCUCUGCGa--CCGCAU- -5'
23839 5' -56.5 NC_005261.1 + 15497 0.66 0.850745
Target:  5'- cUCGcUGCGgGCGGGGCGUgugucGGCGUGc -3'
miRNA:   3'- cAGCaGCGCaUGCUCUGCGa----CCGCAU- -5'
23839 5' -56.5 NC_005261.1 + 17119 0.66 0.850745
Target:  5'- aGUUGuaUCGCGgcgGCGGGuACGCcGGCGg- -3'
miRNA:   3'- -CAGC--AGCGCa--UGCUC-UGCGaCCGCau -5'
23839 5' -56.5 NC_005261.1 + 22798 0.67 0.834513
Target:  5'- gGUUGUCGCGgccgGCGGcGGCGCUGcCGc- -3'
miRNA:   3'- -CAGCAGCGCa---UGCU-CUGCGACcGCau -5'
23839 5' -56.5 NC_005261.1 + 23414 0.67 0.842725
Target:  5'- -aCGUCaacgGCGAGGCGCUGcGCGUc -3'
miRNA:   3'- caGCAGcgcaUGCUCUGCGAC-CGCAu -5'
23839 5' -56.5 NC_005261.1 + 33062 0.66 0.858566
Target:  5'- cUCGgCGcCGgggACGcGGCGCUGGCGg- -3'
miRNA:   3'- cAGCaGC-GCa--UGCuCUGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 43460 0.7 0.663319
Target:  5'- -aCGUCGCcggGCGGG-UGCUGGCGg- -3'
miRNA:   3'- caGCAGCGca-UGCUCuGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 47135 0.67 0.834513
Target:  5'- gGUCGUCGCGcAC-AG-CGCcGGCGUc -3'
miRNA:   3'- -CAGCAGCGCaUGcUCuGCGaCCGCAu -5'
23839 5' -56.5 NC_005261.1 + 57791 0.66 0.858566
Target:  5'- -gCGUCGCGcgGCGGGcGCGCgaaGGcCGUGa -3'
miRNA:   3'- caGCAGCGCa-UGCUC-UGCGa--CC-GCAU- -5'
23839 5' -56.5 NC_005261.1 + 63324 0.67 0.834513
Target:  5'- --gGUCGcCGUACGAGugGCgcuGCGa- -3'
miRNA:   3'- cagCAGC-GCAUGCUCugCGac-CGCau -5'
23839 5' -56.5 NC_005261.1 + 72166 0.69 0.743564
Target:  5'- -gUGUCcgggaucccgGCGUcCGAGACGUUGGCGg- -3'
miRNA:   3'- caGCAG----------CGCAuGCUCUGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 73761 0.66 0.880769
Target:  5'- -aCGgcCGCuucUACGAGGCGCUGGCc-- -3'
miRNA:   3'- caGCa-GCGc--AUGCUCUGCGACCGcau -5'
23839 5' -56.5 NC_005261.1 + 76227 0.66 0.880769
Target:  5'- -cCG-CGCGcuugACGAGACGC-GGCGc- -3'
miRNA:   3'- caGCaGCGCa---UGCUCUGCGaCCGCau -5'
23839 5' -56.5 NC_005261.1 + 77075 0.69 0.723906
Target:  5'- -gUGcCGC--GCGAGGCGCUGGCGc- -3'
miRNA:   3'- caGCaGCGcaUGCUCUGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 80050 0.67 0.826115
Target:  5'- -cCGUCGCcacugGCGgcGGGCGCggggGGCGUGg -3'
miRNA:   3'- caGCAGCGca---UGC--UCUGCGa---CCGCAU- -5'
23839 5' -56.5 NC_005261.1 + 81334 0.66 0.850745
Target:  5'- cGUCGUCGgGgccgucgGCGGGGCGggGGCu-- -3'
miRNA:   3'- -CAGCAGCgCa------UGCUCUGCgaCCGcau -5'
23839 5' -56.5 NC_005261.1 + 84970 0.67 0.826115
Target:  5'- cGUCGggCGCGUccGCGAuGCGCcGGCGc- -3'
miRNA:   3'- -CAGCa-GCGCA--UGCUcUGCGaCCGCau -5'
23839 5' -56.5 NC_005261.1 + 89260 0.73 0.492086
Target:  5'- -cUGUCGUGUGCGGGcgacGgGCUGGCGUu -3'
miRNA:   3'- caGCAGCGCAUGCUC----UgCGACCGCAu -5'
23839 5' -56.5 NC_005261.1 + 90375 0.67 0.834513
Target:  5'- cUCGUgCGCG-GCGAGGCcccgccggcgggGCUGGCGc- -3'
miRNA:   3'- cAGCA-GCGCaUGCUCUG------------CGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 90737 0.67 0.808796
Target:  5'- --gGcCGCGccUGAGGCGCUGGCGc- -3'
miRNA:   3'- cagCaGCGCauGCUCUGCGACCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.