miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 5' -56.5 NC_005261.1 + 107364 0.67 0.79989
Target:  5'- cGUCGUCGUGggcgcCGGGGCGCccGCGUc -3'
miRNA:   3'- -CAGCAGCGCau---GCUCUGCGacCGCAu -5'
23839 5' -56.5 NC_005261.1 + 115988 0.68 0.772293
Target:  5'- aGUCGUCGCugACGAGcCGCccgaGGCGg- -3'
miRNA:   3'- -CAGCAGCGcaUGCUCuGCGa---CCGCau -5'
23839 5' -56.5 NC_005261.1 + 127558 0.68 0.771353
Target:  5'- gGUUGUaCGCGUGCGucggcccgcaccaGGGCGCccugGGCGUc -3'
miRNA:   3'- -CAGCA-GCGCAUGC-------------UCUGCGa---CCGCAu -5'
23839 5' -56.5 NC_005261.1 + 123174 0.68 0.76283
Target:  5'- -gCG-CGCGgGCGuGGugGCUGGUGUGg -3'
miRNA:   3'- caGCaGCGCaUGC-UCugCGACCGCAU- -5'
23839 5' -56.5 NC_005261.1 + 110521 0.68 0.76283
Target:  5'- -cCGUCGUcUGCGGGGCGCaggagGGCGc- -3'
miRNA:   3'- caGCAGCGcAUGCUCUGCGa----CCGCau -5'
23839 5' -56.5 NC_005261.1 + 72166 0.69 0.743564
Target:  5'- -gUGUCcgggaucccgGCGUcCGAGACGUUGGCGg- -3'
miRNA:   3'- caGCAG----------CGCAuGCUCUGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 77075 0.69 0.723906
Target:  5'- -gUGcCGC--GCGAGGCGCUGGCGc- -3'
miRNA:   3'- caGCaGCGcaUGCUCUGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 130015 0.69 0.713953
Target:  5'- uUCGUCaCGacgGCGGuGAUGCUGGCGUc -3'
miRNA:   3'- cAGCAGcGCa--UGCU-CUGCGACCGCAu -5'
23839 5' -56.5 NC_005261.1 + 109197 0.69 0.70393
Target:  5'- cGUCGg-GCGUGCGcAGGCGCUcguaGGCGc- -3'
miRNA:   3'- -CAGCagCGCAUGC-UCUGCGA----CCGCau -5'
23839 5' -56.5 NC_005261.1 + 99010 0.69 0.70393
Target:  5'- -gCGUCGCGaGCGGcGGCGC-GGCGg- -3'
miRNA:   3'- caGCAGCGCaUGCU-CUGCGaCCGCau -5'
23839 5' -56.5 NC_005261.1 + 13666 0.7 0.683711
Target:  5'- -cCGcCGCGgggggggcGCGGGGCGCgcgGGCGUGg -3'
miRNA:   3'- caGCaGCGCa-------UGCUCUGCGa--CCGCAU- -5'
23839 5' -56.5 NC_005261.1 + 43460 0.7 0.663319
Target:  5'- -aCGUCGCcggGCGGG-UGCUGGCGg- -3'
miRNA:   3'- caGCAGCGca-UGCUCuGCGACCGCau -5'
23839 5' -56.5 NC_005261.1 + 89260 0.73 0.492086
Target:  5'- -cUGUCGUGUGCGGGcgacGgGCUGGCGUu -3'
miRNA:   3'- caGCAGCGCAUGCUC----UgCGACCGCAu -5'
23839 5' -56.5 NC_005261.1 + 124184 0.73 0.473063
Target:  5'- -gCGUCGCGUgGgGGGACGCguccggUGGCGUGa -3'
miRNA:   3'- caGCAGCGCA-UgCUCUGCG------ACCGCAU- -5'
23839 5' -56.5 NC_005261.1 + 118381 0.74 0.418366
Target:  5'- -gCG-CGCGgccCGAGGCGCUGGCGg- -3'
miRNA:   3'- caGCaGCGCau-GCUCUGCGACCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.