miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2384 5' -60 NC_001416.1 + 15033 0.66 0.430772
Target:  5'- --cGCCGuuaACCCGGACguGCUGACGUc- -3'
miRNA:   3'- uguCGGUc--UGGGCCUG--CGACUGCGag -5'
2384 5' -60 NC_001416.1 + 45683 0.66 0.425124
Target:  5'- aGCAGCUuggccugaaAGACUUcucuccgaaaagucaGGACGCUGugGCa- -3'
miRNA:   3'- -UGUCGG---------UCUGGG---------------CCUGCGACugCGag -5'
2384 5' -60 NC_001416.1 + 11045 0.66 0.421383
Target:  5'- -gAGCCGGGCaggCGGcaGgGCUGACGUUUa -3'
miRNA:   3'- ugUCGGUCUGg--GCC--UgCGACUGCGAG- -5'
2384 5' -60 NC_001416.1 + 12370 0.66 0.40298
Target:  5'- aGCAGaaaaAGACCUGGGCGgCUGAagaccaGCUUc -3'
miRNA:   3'- -UGUCgg--UCUGGGCCUGC-GACUg-----CGAG- -5'
2384 5' -60 NC_001416.1 + 18583 0.66 0.401168
Target:  5'- gACGGCCAGuCCacacugcuucACGCUGGCGCg- -3'
miRNA:   3'- -UGUCGGUCuGGgcc-------UGCGACUGCGag -5'
2384 5' -60 NC_001416.1 + 3855 0.67 0.376352
Target:  5'- cCAGCCGGA-CCGG-CGCUGcgGCGUa- -3'
miRNA:   3'- uGUCGGUCUgGGCCuGCGAC--UGCGag -5'
2384 5' -60 NC_001416.1 + 7256 0.67 0.359271
Target:  5'- uCAGCCuGACggGGACGaaagaagaaCUGGCGCUCc -3'
miRNA:   3'- uGUCGGuCUGggCCUGC---------GACUGCGAG- -5'
2384 5' -60 NC_001416.1 + 5936 0.68 0.318984
Target:  5'- uGCuGaCCAGACCagcaccACGCUGACGUUCu -3'
miRNA:   3'- -UGuC-GGUCUGGgcc---UGCGACUGCGAG- -5'
2384 5' -60 NC_001416.1 + 11964 0.68 0.311345
Target:  5'- uCAGgCAGaACUCGGACGCUGGagaaGCa- -3'
miRNA:   3'- uGUCgGUC-UGGGCCUGCGACUg---CGag -5'
2384 5' -60 NC_001416.1 + 16415 0.68 0.311345
Target:  5'- cCAGUCAGugCCGGACGgcuUUGGCGg-- -3'
miRNA:   3'- uGUCGGUCugGGCCUGC---GACUGCgag -5'
2384 5' -60 NC_001416.1 + 7570 0.7 0.248834
Target:  5'- cGCGGCCuGGCCagaaugcaauaaCGGgagGCGCUGugGCUg -3'
miRNA:   3'- -UGUCGGuCUGG------------GCC---UGCGACugCGAg -5'
2384 5' -60 NC_001416.1 + 3522 0.71 0.213186
Target:  5'- cCAGCCAGgauACCCGuccuCGCUGACGUa- -3'
miRNA:   3'- uGUCGGUC---UGGGCcu--GCGACUGCGag -5'
2384 5' -60 NC_001416.1 + 4688 0.73 0.135232
Target:  5'- uCAGCCGGACgCGGGCGCUGcagcCGUacUCg -3'
miRNA:   3'- uGUCGGUCUGgGCCUGCGACu---GCG--AG- -5'
2384 5' -60 NC_001416.1 + 1933 0.74 0.11463
Target:  5'- cACGGUCAGGaaCGGGCGCUGAauaaUGCUCu -3'
miRNA:   3'- -UGUCGGUCUggGCCUGCGACU----GCGAG- -5'
2384 5' -60 NC_001416.1 + 16982 1.09 0.000265
Target:  5'- aACAGCCAGACCCGGACGCUGACGCUCg -3'
miRNA:   3'- -UGUCGGUCUGGGCCUGCGACUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.