miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 3' -57.6 NC_005261.1 + 83145 0.67 0.710385
Target:  5'- -cCCUGCAGGUgCgGCAgguaCugGCUCa -3'
miRNA:   3'- gaGGACGUUCGgGaCGUag--GugCGAG- -5'
23840 3' -57.6 NC_005261.1 + 113103 0.68 0.700245
Target:  5'- cCUCCUG-GAGCUCgGCAUggaCAUGCUCu -3'
miRNA:   3'- -GAGGACgUUCGGGaCGUAg--GUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 82802 0.68 0.700245
Target:  5'- gCUCCgccGC-GGCcaCCUGCAgccggugCCGCGCUCc -3'
miRNA:   3'- -GAGGa--CGuUCG--GGACGUa------GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 10020 0.68 0.690048
Target:  5'- -aCCggGCGGGCCUcGCGUCggggGCGCUCg -3'
miRNA:   3'- gaGGa-CGUUCGGGaCGUAGg---UGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 122991 0.68 0.652992
Target:  5'- cCUCCUGCAgGGCCaCUacggccgcggccgugGCGUCCGCGagcgUCg -3'
miRNA:   3'- -GAGGACGU-UCGG-GA---------------CGUAGGUGCg---AG- -5'
23840 3' -57.6 NC_005261.1 + 62994 0.68 0.648854
Target:  5'- cCUCCaGCcGGCCCUcgGCggCCGCGCcCg -3'
miRNA:   3'- -GAGGaCGuUCGGGA--CGuaGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 18012 0.68 0.648854
Target:  5'- uUCCUGCGGGuCCCcGCua--GCGCUCc -3'
miRNA:   3'- gAGGACGUUC-GGGaCGuaggUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 104293 0.68 0.648854
Target:  5'- -gCCUcGCAGGCCC-GCG--CGCGCUCa -3'
miRNA:   3'- gaGGA-CGUUCGGGaCGUagGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 106734 0.69 0.638499
Target:  5'- cCUCgUGCA-GCCCcgGCGccUCCGCGCcCg -3'
miRNA:   3'- -GAGgACGUuCGGGa-CGU--AGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 16986 0.69 0.634356
Target:  5'- -aCCUGCGGGUCCgcgaucagcgccaGCAUgucgcacgcggCCGCGCUCg -3'
miRNA:   3'- gaGGACGUUCGGGa------------CGUA-----------GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 51780 0.69 0.62814
Target:  5'- -gCCgGCGucGCCCUGCuggccguggCCAUGCUCg -3'
miRNA:   3'- gaGGaCGUu-CGGGACGua-------GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 81923 0.69 0.62814
Target:  5'- cCUCCUugaggugcgggaGCAGGCCCacGUucUCCACGCUa -3'
miRNA:   3'- -GAGGA------------CGUUCGGGa-CGu-AGGUGCGAg -5'
23840 3' -57.6 NC_005261.1 + 1638 0.7 0.556141
Target:  5'- gCUCCc-CGAGCCCcaGCG-CCGCGCUCu -3'
miRNA:   3'- -GAGGacGUUCGGGa-CGUaGGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 103183 0.7 0.535951
Target:  5'- gUCCUGCAcGCCC-GCggUCACGCg- -3'
miRNA:   3'- gAGGACGUuCGGGaCGuaGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 130211 0.7 0.532944
Target:  5'- cCUCCUGCAggcggaagagcgucGGCCCgcucagGCG-CCGCGC-Ca -3'
miRNA:   3'- -GAGGACGU--------------UCGGGa-----CGUaGGUGCGaG- -5'
23840 3' -57.6 NC_005261.1 + 103215 0.71 0.506171
Target:  5'- cCUCCUGCAggaagcgcgcgcAGUCCUccGcCGUCCGCGCg- -3'
miRNA:   3'- -GAGGACGU------------UCGGGA--C-GUAGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 28460 0.71 0.486716
Target:  5'- uCUCCcgGCGGGCaCgaGCcggCCACGCUCg -3'
miRNA:   3'- -GAGGa-CGUUCG-GgaCGua-GGUGCGAG- -5'
23840 3' -57.6 NC_005261.1 + 10168 0.71 0.486716
Target:  5'- -aCCUGCGacGGCuCCUGCcgCCucugcCGCUCg -3'
miRNA:   3'- gaGGACGU--UCG-GGACGuaGGu----GCGAG- -5'
23840 3' -57.6 NC_005261.1 + 130668 0.71 0.477122
Target:  5'- gCUCCUcgGCGAGcCCCUGC--CCGCGCg- -3'
miRNA:   3'- -GAGGA--CGUUC-GGGACGuaGGUGCGag -5'
23840 3' -57.6 NC_005261.1 + 10519 0.72 0.430641
Target:  5'- --gCUGCGGGCCCcGCGg-CGCGCUCg -3'
miRNA:   3'- gagGACGUUCGGGaCGUagGUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.