Results 41 - 60 of 234 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 62299 | 0.66 | 0.842285 |
Target: 5'- gGCGccGCGCGGGCGCGcGGcGGCcccGCGGUCc -3' miRNA: 3'- -UGCu-CGCGCUCGUGC-UC-UCG---CGUUAG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 98670 | 0.67 | 0.833991 |
Target: 5'- gGCGAGgGCGGGCuccgcCGGGgccggaGGCGCGGc- -3' miRNA: 3'- -UGCUCgCGCUCGu----GCUC------UCGCGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 72573 | 0.67 | 0.833991 |
Target: 5'- cCGGGCGcCGAGUcccaAGAGgGCGAUCg -3' miRNA: 3'- uGCUCGC-GCUCGugc-UCUCgCGUUAG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 71199 | 0.67 | 0.833991 |
Target: 5'- -gGGGCGCGGccagcuGCGCGAuGGUGCGcgCg -3' miRNA: 3'- ugCUCGCGCU------CGUGCUcUCGCGUuaG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 133063 | 0.67 | 0.833991 |
Target: 5'- gGCGuuGGCgGCGAGUACGucagcuucuucGAGCGCAAg- -3' miRNA: 3'- -UGC--UCG-CGCUCGUGCu----------CUCGCGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 89093 | 0.67 | 0.833991 |
Target: 5'- uGCG-GCcCGGGCGCGcuGGCGCGcgCg -3' miRNA: 3'- -UGCuCGcGCUCGUGCucUCGCGUuaG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 131918 | 0.67 | 0.833991 |
Target: 5'- gACGGGCuuuuugGCGcGCGCGGGAcCGCGGUg -3' miRNA: 3'- -UGCUCG------CGCuCGUGCUCUcGCGUUAg -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 2131 | 0.67 | 0.833991 |
Target: 5'- cCGAGCGCGcuCACGuccGGCGCGcccGUCc -3' miRNA: 3'- uGCUCGCGCucGUGCuc-UCGCGU---UAG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 99454 | 0.67 | 0.833991 |
Target: 5'- -aGAGCGCGGGCcgacccGCGGcGGCGCu--- -3' miRNA: 3'- ugCUCGCGCUCG------UGCUcUCGCGuuag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 3866 | 0.67 | 0.833991 |
Target: 5'- cGCGcGGCcgGCGAGCACG-GcGCGCAGc- -3' miRNA: 3'- -UGC-UCG--CGCUCGUGCuCuCGCGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 69969 | 0.67 | 0.828924 |
Target: 5'- cCGGGCGCGcGCuagaacgcCGGGAcggccgaguacccgcGCGCGAUCg -3' miRNA: 3'- uGCUCGCGCuCGu-------GCUCU---------------CGCGUUAG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 41768 | 0.67 | 0.82551 |
Target: 5'- cACGAGCGCGAGgugcucuuccguCACGGGcaGGcCGUAcUCg -3' miRNA: 3'- -UGCUCGCGCUC------------GUGCUC--UC-GCGUuAG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 33783 | 0.67 | 0.82551 |
Target: 5'- gGCGAGCGCuGGGCcccGCGcGGGCgGCGGg- -3' miRNA: 3'- -UGCUCGCG-CUCG---UGCuCUCG-CGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 93338 | 0.67 | 0.82551 |
Target: 5'- cACGuccGCGCGcAGCGCGcGcAGCGCGcgCc -3' miRNA: 3'- -UGCu--CGCGC-UCGUGCuC-UCGCGUuaG- -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 90067 | 0.67 | 0.82551 |
Target: 5'- gGCGcccCGCGGGCGcCGAGGGCaGCGAc- -3' miRNA: 3'- -UGCuc-GCGCUCGU-GCUCUCG-CGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 79205 | 0.67 | 0.82551 |
Target: 5'- aACGAG-GCGAugccugacacGguCGAGAGCGCGGc- -3' miRNA: 3'- -UGCUCgCGCU----------CguGCUCUCGCGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 77203 | 0.67 | 0.824651 |
Target: 5'- gGCGAGCGCGguguucccgcuGGC-CGggggggaggagccAGAGCGCAGc- -3' miRNA: 3'- -UGCUCGCGC-----------UCGuGC-------------UCUCGCGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 70983 | 0.67 | 0.816848 |
Target: 5'- -aGAGCGCGuGGCGCGcGGGCGg---- -3' miRNA: 3'- ugCUCGCGC-UCGUGCuCUCGCguuag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 93372 | 0.67 | 0.816848 |
Target: 5'- uGCGccGGCGUGAGCAgGAGGuUGCAGa- -3' miRNA: 3'- -UGC--UCGCGCUCGUgCUCUcGCGUUag -5' |
|||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 121794 | 0.67 | 0.816848 |
Target: 5'- gGCGGGC-UGGGCA-GGGGGCGCGu-- -3' miRNA: 3'- -UGCUCGcGCUCGUgCUCUCGCGUuag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home