miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 62299 0.66 0.842285
Target:  5'- gGCGccGCGCGGGCGCGcGGcGGCcccGCGGUCc -3'
miRNA:   3'- -UGCu-CGCGCUCGUGC-UC-UCG---CGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 98670 0.67 0.833991
Target:  5'- gGCGAGgGCGGGCuccgcCGGGgccggaGGCGCGGc- -3'
miRNA:   3'- -UGCUCgCGCUCGu----GCUC------UCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 72573 0.67 0.833991
Target:  5'- cCGGGCGcCGAGUcccaAGAGgGCGAUCg -3'
miRNA:   3'- uGCUCGC-GCUCGugc-UCUCgCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 71199 0.67 0.833991
Target:  5'- -gGGGCGCGGccagcuGCGCGAuGGUGCGcgCg -3'
miRNA:   3'- ugCUCGCGCU------CGUGCUcUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 133063 0.67 0.833991
Target:  5'- gGCGuuGGCgGCGAGUACGucagcuucuucGAGCGCAAg- -3'
miRNA:   3'- -UGC--UCG-CGCUCGUGCu----------CUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 89093 0.67 0.833991
Target:  5'- uGCG-GCcCGGGCGCGcuGGCGCGcgCg -3'
miRNA:   3'- -UGCuCGcGCUCGUGCucUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 131918 0.67 0.833991
Target:  5'- gACGGGCuuuuugGCGcGCGCGGGAcCGCGGUg -3'
miRNA:   3'- -UGCUCG------CGCuCGUGCUCUcGCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 2131 0.67 0.833991
Target:  5'- cCGAGCGCGcuCACGuccGGCGCGcccGUCc -3'
miRNA:   3'- uGCUCGCGCucGUGCuc-UCGCGU---UAG- -5'
23840 5' -56.3 NC_005261.1 + 99454 0.67 0.833991
Target:  5'- -aGAGCGCGGGCcgacccGCGGcGGCGCu--- -3'
miRNA:   3'- ugCUCGCGCUCG------UGCUcUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 3866 0.67 0.833991
Target:  5'- cGCGcGGCcgGCGAGCACG-GcGCGCAGc- -3'
miRNA:   3'- -UGC-UCG--CGCUCGUGCuCuCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 69969 0.67 0.828924
Target:  5'- cCGGGCGCGcGCuagaacgcCGGGAcggccgaguacccgcGCGCGAUCg -3'
miRNA:   3'- uGCUCGCGCuCGu-------GCUCU---------------CGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 41768 0.67 0.82551
Target:  5'- cACGAGCGCGAGgugcucuuccguCACGGGcaGGcCGUAcUCg -3'
miRNA:   3'- -UGCUCGCGCUC------------GUGCUC--UC-GCGUuAG- -5'
23840 5' -56.3 NC_005261.1 + 33783 0.67 0.82551
Target:  5'- gGCGAGCGCuGGGCcccGCGcGGGCgGCGGg- -3'
miRNA:   3'- -UGCUCGCG-CUCG---UGCuCUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 93338 0.67 0.82551
Target:  5'- cACGuccGCGCGcAGCGCGcGcAGCGCGcgCc -3'
miRNA:   3'- -UGCu--CGCGC-UCGUGCuC-UCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 90067 0.67 0.82551
Target:  5'- gGCGcccCGCGGGCGcCGAGGGCaGCGAc- -3'
miRNA:   3'- -UGCuc-GCGCUCGU-GCUCUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 79205 0.67 0.82551
Target:  5'- aACGAG-GCGAugccugacacGguCGAGAGCGCGGc- -3'
miRNA:   3'- -UGCUCgCGCU----------CguGCUCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 77203 0.67 0.824651
Target:  5'- gGCGAGCGCGguguucccgcuGGC-CGggggggaggagccAGAGCGCAGc- -3'
miRNA:   3'- -UGCUCGCGC-----------UCGuGC-------------UCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 70983 0.67 0.816848
Target:  5'- -aGAGCGCGuGGCGCGcGGGCGg---- -3'
miRNA:   3'- ugCUCGCGC-UCGUGCuCUCGCguuag -5'
23840 5' -56.3 NC_005261.1 + 93372 0.67 0.816848
Target:  5'- uGCGccGGCGUGAGCAgGAGGuUGCAGa- -3'
miRNA:   3'- -UGC--UCGCGCUCGUgCUCUcGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 121794 0.67 0.816848
Target:  5'- gGCGGGC-UGGGCA-GGGGGCGCGu-- -3'
miRNA:   3'- -UGCUCGcGCUCGUgCUCUCGCGUuag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.