miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 128091 0.67 0.505485
Target:  5'- aGCgGGuuaaCGGGcGAgCGGCGCGGCgCg -3'
miRNA:   3'- -CGaCCug--GCCCcCUaGCCGCGCCGgG- -5'
23842 3' -64.4 NC_005261.1 + 45614 0.67 0.505485
Target:  5'- ----cACCGGcGGcgCGGCGCGGCgCg -3'
miRNA:   3'- cgaccUGGCCcCCuaGCCGCGCCGgG- -5'
23842 3' -64.4 NC_005261.1 + 33820 0.67 0.505485
Target:  5'- uUUGGgcgGCCGGGG----GGCGCGGgCCCc -3'
miRNA:   3'- cGACC---UGGCCCCcuagCCGCGCC-GGG- -5'
23842 3' -64.4 NC_005261.1 + 33064 0.67 0.505485
Target:  5'- --cGGcGCCGGGGacgCGGCgcugGCGGCCg -3'
miRNA:   3'- cgaCC-UGGCCCCcuaGCCG----CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 68604 0.67 0.505485
Target:  5'- aGCgGGGCCgacggcguGGGGGAggauGCGCGcccGCCCg -3'
miRNA:   3'- -CGaCCUGG--------CCCCCUagc-CGCGC---CGGG- -5'
23842 3' -64.4 NC_005261.1 + 5488 0.67 0.505485
Target:  5'- cGCgc-GCCGGGGGGUagcuggggccgCGGCaGCGGCg- -3'
miRNA:   3'- -CGaccUGGCCCCCUA-----------GCCG-CGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 52983 0.67 0.505485
Target:  5'- cGCcGGcaGgCGGGGGcggcgcccaggcGUCGGCGCaGCUCg -3'
miRNA:   3'- -CGaCC--UgGCCCCC------------UAGCCGCGcCGGG- -5'
23842 3' -64.4 NC_005261.1 + 96959 0.67 0.505485
Target:  5'- gGCgGGgcagccGCCGGGcGcGAuucacgcggccUCGGCGCGGCUa -3'
miRNA:   3'- -CGaCC------UGGCCC-C-CU-----------AGCCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 132628 0.67 0.504574
Target:  5'- cGCUGGcGCCGaggacgcGGGcgCGGCggcccuaGCGGCCg -3'
miRNA:   3'- -CGACC-UGGCc------CCCuaGCCG-------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 43102 0.67 0.49641
Target:  5'- cGCUacgaGGACgUGGcgcGGGAUUGGCGC-GCCUa -3'
miRNA:   3'- -CGA----CCUG-GCC---CCCUAGCCGCGcCGGG- -5'
23842 3' -64.4 NC_005261.1 + 463 0.67 0.49641
Target:  5'- cGCgacGGCCGGcGGGAU-GGCGCGGg-- -3'
miRNA:   3'- -CGac-CUGGCC-CCCUAgCCGCGCCggg -5'
23842 3' -64.4 NC_005261.1 + 138134 0.67 0.49641
Target:  5'- cGCgacGGCCGGcGGGAU-GGCGCGGg-- -3'
miRNA:   3'- -CGac-CUGGCC-CCCUAgCCGCGCCggg -5'
23842 3' -64.4 NC_005261.1 + 89840 0.67 0.49641
Target:  5'- gGCcGGGCCGGaGGGccgCGGCGUcaucGGCg- -3'
miRNA:   3'- -CGaCCUGGCC-CCCua-GCCGCG----CCGgg -5'
23842 3' -64.4 NC_005261.1 + 112674 0.67 0.487409
Target:  5'- gGCUGGAgCGcgaGGGGcUgGGCGUcgaGGCCg -3'
miRNA:   3'- -CGACCUgGC---CCCCuAgCCGCG---CCGGg -5'
23842 3' -64.4 NC_005261.1 + 126992 0.67 0.484723
Target:  5'- --cGGACCGucaGGGGccgaccccgccgcaGGCgGCGGCCCg -3'
miRNA:   3'- cgaCCUGGC---CCCCuag-----------CCG-CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 14741 0.67 0.478486
Target:  5'- cGgUGG-CaGGGGcGAUCGGCGCcGCgCCg -3'
miRNA:   3'- -CgACCuGgCCCC-CUAGCCGCGcCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 34464 0.67 0.476711
Target:  5'- --cGGGCCGGGGGccccguaccugCGGCGgGuGCUg -3'
miRNA:   3'- cgaCCUGGCCCCCua---------GCCGCgC-CGGg -5'
23842 3' -64.4 NC_005261.1 + 6235 0.67 0.47317
Target:  5'- aGgUGcGcCCGGGGaGGgccugcccgccccgCGGgGCGGCCCg -3'
miRNA:   3'- -CgAC-CuGGCCCC-CUa-------------GCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 33752 0.67 0.469644
Target:  5'- cGCcgGGGCCGGGcccgcucgcGGGgcccgCGGCGagcgcugGGCCCc -3'
miRNA:   3'- -CGa-CCUGGCCC---------CCUa----GCCGCg------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 134180 0.67 0.469644
Target:  5'- cGCUGcuugCGGaGGGccUGGCGCGGCUCg -3'
miRNA:   3'- -CGACcug-GCC-CCCuaGCCGCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.