miRNA display CGI


Results 61 - 80 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 106841 0.66 0.688116
Target:  5'- -gCGCGucguccAGcCCGCCGCCuGGGgGGCGGg -3'
miRNA:   3'- ggGCGU------UCcGGUGGCGG-CUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 50174 0.66 0.707369
Target:  5'- aUCCGC-GGG-CACCGCCGcAGCaGCcGGu -3'
miRNA:   3'- -GGGCGuUCCgGUGGCGGC-UUGcCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 18200 0.66 0.688116
Target:  5'- aCCC-CAGGGCCG-CGCCGAuccccCGGUc- -3'
miRNA:   3'- -GGGcGUUCCGGUgGCGGCUu----GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 39546 0.66 0.707369
Target:  5'- gCCGCca-GCC-CCGCgCGcgcGCGGCGGu -3'
miRNA:   3'- gGGCGuucCGGuGGCG-GCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 75595 0.66 0.707369
Target:  5'- gCUCGCGcGcGCCGCgGaCgCGGACGGCGu -3'
miRNA:   3'- -GGGCGUuC-CGGUGgC-G-GCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 22820 0.66 0.697768
Target:  5'- gCUGCc--GCCGCCGCCGu-UGGCGc -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCuuGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 65588 0.66 0.697768
Target:  5'- gUCCGCGAGcucCUGCuCGCCGGgguCGGCGa -3'
miRNA:   3'- -GGGCGUUCc--GGUG-GCGGCUu--GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 92469 0.66 0.725444
Target:  5'- gUCCGgauGAGcGgCACCGCgagcucgCGGACGGCGGc -3'
miRNA:   3'- -GGGCg--UUC-CgGUGGCG-------GCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 129312 0.66 0.688116
Target:  5'- cCCCGCGccugcgcuGGcGCCGCguCGCCGAccucGCcGCGGu -3'
miRNA:   3'- -GGGCGU--------UC-CGGUG--GCGGCU----UGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29623 0.66 0.726389
Target:  5'- aCCGgGAGcgugacggcGCCGCUGCCGc-CGGuCGGg -3'
miRNA:   3'- gGGCgUUC---------CGGUGGCGGCuuGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 105354 0.66 0.697768
Target:  5'- gCCGUGAGGCagGCCGU--GACaGGCGGc -3'
miRNA:   3'- gGGCGUUCCGg-UGGCGgcUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 103015 0.66 0.726389
Target:  5'- cUCCGCGuGGCUcUCGaaGAACGcGCGGn -3'
miRNA:   3'- -GGGCGUuCCGGuGGCggCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 122711 0.66 0.707369
Target:  5'- gCCGCc-GGCCgcGCCGUCGAuguucacguCGGCGc -3'
miRNA:   3'- gGGCGuuCCGG--UGGCGGCUu--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 127576 0.66 0.726389
Target:  5'- gCCCGCAccAGGgCGCC-CUGGGCGucuuCGGg -3'
miRNA:   3'- -GGGCGU--UCCgGUGGcGGCUUGCc---GCC- -5'
23844 3' -60.9 NC_005261.1 + 42227 0.66 0.716912
Target:  5'- gCCGCGAGcuCCGCCGCgcgcagcgccuCGAACugcccgcgcgaGGCGGc -3'
miRNA:   3'- gGGCGUUCc-GGUGGCG-----------GCUUG-----------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 54084 0.66 0.723553
Target:  5'- gCCGCGcGGaCCGCCacguuGCCGAugGccgcccgcacgaccGCGGg -3'
miRNA:   3'- gGGCGUuCC-GGUGG-----CGGCUugC--------------CGCC- -5'
23844 3' -60.9 NC_005261.1 + 13338 0.66 0.688116
Target:  5'- aCUCGCGcGGCCAgCggucggcggagGCUGGGCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGUgG-----------CGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 103912 0.66 0.688116
Target:  5'- aCCCGC---GCCGCCagGUCGGgcGCGGCGu -3'
miRNA:   3'- -GGGCGuucCGGUGG--CGGCU--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 107301 0.66 0.716912
Target:  5'- cUCCGCcgcGGCCACgGCCGccGCGuGCa- -3'
miRNA:   3'- -GGGCGuu-CCGGUGgCGGCu-UGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 112244 0.66 0.704494
Target:  5'- gCCGUgGAGGCCAUcaccacggaggucgCGCgGAuccugcucaaccGCGGCGGg -3'
miRNA:   3'- gGGCG-UUCCGGUG--------------GCGgCU------------UGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.