miRNA display CGI


Results 101 - 120 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 10221 0.66 0.688116
Target:  5'- gCCCGCGccugcccaggcGGGCCcgcgcacucGCCGCCGcgGGCcuGGCGc -3'
miRNA:   3'- -GGGCGU-----------UCCGG---------UGGCGGC--UUG--CCGCc -5'
23844 3' -60.9 NC_005261.1 + 74906 0.66 0.688116
Target:  5'- gCCCGCGcuGGCCGCgCGggGGAgGGCGa -3'
miRNA:   3'- -GGGCGUu-CCGGUG-GCggCUUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 18200 0.66 0.688116
Target:  5'- aCCC-CAGGGCCG-CGCCGAuccccCGGUc- -3'
miRNA:   3'- -GGGcGUUCCGGUgGCGGCUu----GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 80237 0.66 0.716912
Target:  5'- gCCGgAAGGCCacgacgaaGCCGCCGcGCGccaGGu -3'
miRNA:   3'- gGGCgUUCCGG--------UGGCGGCuUGCcg-CC- -5'
23844 3' -60.9 NC_005261.1 + 107706 0.66 0.735791
Target:  5'- gCCGCcgaacGUCGCUGCCGcGGCaGGCGGc -3'
miRNA:   3'- gGGCGuuc--CGGUGGCGGC-UUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 122711 0.66 0.707369
Target:  5'- gCCGCc-GGCCgcGCCGUCGAuguucacguCGGCGc -3'
miRNA:   3'- gGGCGuuCCGG--UGGCGGCUu--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 130133 0.66 0.726389
Target:  5'- gCCGCGc-GCCGuCCGCCGAGC-GCa- -3'
miRNA:   3'- gGGCGUucCGGU-GGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 50174 0.66 0.707369
Target:  5'- aUCCGC-GGG-CACCGCCGcAGCaGCcGGu -3'
miRNA:   3'- -GGGCGuUCCgGUGGCGGC-UUGcCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 52686 0.66 0.707369
Target:  5'- cCCUGCucgcGGGCgCGCCGCUGc-CGGCc- -3'
miRNA:   3'- -GGGCGu---UCCG-GUGGCGGCuuGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 103628 0.66 0.726389
Target:  5'- gCgGCGGcGGCCAUCGCCucGaaGCGGg -3'
miRNA:   3'- gGgCGUU-CCGGUGGCGGcuUgcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126538 0.66 0.726389
Target:  5'- gCCGCGccucGGCCACgCGCCGccguCGcGCGc -3'
miRNA:   3'- gGGCGUu---CCGGUG-GCGGCuu--GC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 127636 0.66 0.707369
Target:  5'- -aCGCGAcGGCgGCggCGCCGGgggGCGcGCGGg -3'
miRNA:   3'- ggGCGUU-CCGgUG--GCGGCU---UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 106801 0.66 0.735791
Target:  5'- gCCCGCA---CCAgCGCCGAGUGGCc- -3'
miRNA:   3'- -GGGCGUuccGGUgGCGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 48822 0.66 0.735791
Target:  5'- gUCCGCGAcgccgucgucGGCCccGCCGCCGcGCaGCa- -3'
miRNA:   3'- -GGGCGUU----------CCGG--UGGCGGCuUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 51427 0.66 0.696804
Target:  5'- gCCUGCuGGGCCccggGCgCGCCGugaugaucaaccuGGCcGGCGGu -3'
miRNA:   3'- -GGGCGuUCCGG----UG-GCGGC-------------UUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 54976 0.66 0.726389
Target:  5'- aCUCGCAAaggucuuuacGGCCA-CGCCG-GCGGCc- -3'
miRNA:   3'- -GGGCGUU----------CCGGUgGCGGCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 130180 0.66 0.735791
Target:  5'- gCCggcaGCAGGGagcugacggccaCCACCGCCuccuGCaGGCGGa -3'
miRNA:   3'- -GGg---CGUUCC------------GGUGGCGGcu--UG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135417 0.66 0.735791
Target:  5'- aCCGCAuguucgAGGUgcgcucgcaCGCCGCCcaGGCGGCGcGg -3'
miRNA:   3'- gGGCGU------UCCG---------GUGGCGGc-UUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 43773 0.66 0.707369
Target:  5'- gCUCGUggGGCgGCgCGCgGAggGCGccGCGGg -3'
miRNA:   3'- -GGGCGuuCCGgUG-GCGgCU--UGC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 75595 0.66 0.707369
Target:  5'- gCUCGCGcGcGCCGCgGaCgCGGACGGCGu -3'
miRNA:   3'- -GGGCGUuC-CGGUGgC-G-GCUUGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.