miRNA display CGI


Results 121 - 140 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 461 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 90730 0.66 0.726389
Target:  5'- aCCGCuGGGCCG-CGCCuGAGgcgcUGGCGcGg -3'
miRNA:   3'- gGGCGuUCCGGUgGCGG-CUU----GCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 84939 0.66 0.688116
Target:  5'- uCgCGCAGcaccuccucGGCgGCCGCCGAGgCGuCGGg -3'
miRNA:   3'- -GgGCGUU---------CCGgUGGCGGCUU-GCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 47287 0.66 0.745111
Target:  5'- gCCGCGu-GCCACUGUgCGAGCacgagcauGGCGGc -3'
miRNA:   3'- gGGCGUucCGGUGGCG-GCUUG--------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 106801 0.66 0.735791
Target:  5'- gCCCGCA---CCAgCGCCGAGUGGCc- -3'
miRNA:   3'- -GGGCGUuccGGUgGCGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 39963 0.66 0.739529
Target:  5'- cCUCGCGcAGGCUcagcggguugcgcgcGCCGCCG-GCGuGCGu -3'
miRNA:   3'- -GGGCGU-UCCGG---------------UGGCGGCuUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 24528 0.67 0.658936
Target:  5'- --aGCAAGGuguccCCGCCcacguaccugGCCGGGCGGCGc -3'
miRNA:   3'- gggCGUUCC-----GGUGG----------CGGCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 99748 0.67 0.658936
Target:  5'- gCCGCcacacGGCCAgcaCGUCGGACGG-GGa -3'
miRNA:   3'- gGGCGuu---CCGGUg--GCGGCUUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 111305 0.67 0.64916
Target:  5'- gCCGCugccuccGCCGCCGCCGcGCGcuCGGu -3'
miRNA:   3'- gGGCGuuc----CGGUGGCGGCuUGCc-GCC- -5'
23844 3' -60.9 NC_005261.1 + 266 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28441 0.67 0.64916
Target:  5'- aCCGCGGccGGCCAUggCGUCuccCGGCGGg -3'
miRNA:   3'- gGGCGUU--CCGGUG--GCGGcuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 49142 0.67 0.64916
Target:  5'- cCCCGCGcgcAGGUauuuguCCGCaaaGGcggccACGGCGGg -3'
miRNA:   3'- -GGGCGU---UCCGgu----GGCGg--CU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 107585 0.67 0.64916
Target:  5'- -gCGCgAAGGCCGggucCCGCaGGACGGCa- -3'
miRNA:   3'- ggGCG-UUCCGGU----GGCGgCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 290 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 314 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134177 0.67 0.64916
Target:  5'- uCCCGCugcuugcggAGGGCCuggcgcggcucgGCgCGCgGGucGCGGCGGc -3'
miRNA:   3'- -GGGCG---------UUCCGG------------UG-GCGgCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 102337 0.67 0.64916
Target:  5'- gCCGCGccagcucGGCCG-CGUCGAA-GGCGGa -3'
miRNA:   3'- gGGCGUu------CCGGUgGCGGCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 86484 0.67 0.64916
Target:  5'- -aCGCGgccGGGCCGgCGCCuGucuGCGGCaGGg -3'
miRNA:   3'- ggGCGU---UCCGGUgGCGG-Cu--UGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 53609 0.67 0.656005
Target:  5'- aCCGaCGAGGCCGuggccaggcuCCGCCGGagcaGCcaccacagaucgcaGGCGGc -3'
miRNA:   3'- gGGC-GUUCCGGU----------GGCGGCU----UG--------------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109352 0.67 0.64916
Target:  5'- gCCGCGucGCCguccaGCCGCuCGAGC-GCGGc -3'
miRNA:   3'- gGGCGUucCGG-----UGGCG-GCUUGcCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.