miRNA display CGI


Results 141 - 160 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 2434 0.67 0.665768
Target:  5'- gCCGCGAucucGGCCAgCGCCucggggucgaaggcGAGCGcCGGg -3'
miRNA:   3'- gGGCGUU----CCGGUgGCGG--------------CUUGCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 12207 0.67 0.668692
Target:  5'- gCCGCcGGuGCCGCCGCCGcuGCuGCc- -3'
miRNA:   3'- gGGCGuUC-CGGUGGCGGCu-UGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 24528 0.67 0.658936
Target:  5'- --aGCAAGGuguccCCGCCcacguaccugGCCGGGCGGCGc -3'
miRNA:   3'- gggCGUUCC-----GGUGG----------CGGCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 1908 0.67 0.668692
Target:  5'- gCCGCucAGGCCAgCGC---GCGGCGc -3'
miRNA:   3'- gGGCGu-UCCGGUgGCGgcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 84372 0.67 0.658936
Target:  5'- gCCCGCGGgcucggccucGGCCGCCGCCu--CGaGCu- -3'
miRNA:   3'- -GGGCGUU----------CCGGUGGCGGcuuGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 124925 0.67 0.658936
Target:  5'- gCCGCgGAGGCU-CCGCCGcGCGcGCu- -3'
miRNA:   3'- gGGCG-UUCCGGuGGCGGCuUGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 98665 0.67 0.658936
Target:  5'- cCCCagGCGAGGgCGggcuCCGCCGGggccggaggcGCGGcCGGa -3'
miRNA:   3'- -GGG--CGUUCCgGU----GGCGGCU----------UGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 59759 0.67 0.658936
Target:  5'- aCCagGC-AGGCCuccaugugcucgGCCGCagCGAcgGCGGCGGg -3'
miRNA:   3'- -GGg-CGuUCCGG------------UGGCG--GCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 107117 0.67 0.658936
Target:  5'- gCCGC---GCCACCgcGCCGGcgACGGCGc -3'
miRNA:   3'- gGGCGuucCGGUGG--CGGCU--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 314 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 32001 0.67 0.668692
Target:  5'- gCCCGU---GCCGCCGCgCGAGuacCGGCa- -3'
miRNA:   3'- -GGGCGuucCGGUGGCG-GCUU---GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 34929 0.67 0.667718
Target:  5'- gCCaCGCGggGGGCgGCCGgcgcgacCCGGGCccGGCGGc -3'
miRNA:   3'- -GG-GCGU--UCCGgUGGC-------GGCUUG--CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 47629 0.67 0.662842
Target:  5'- gCCGC--GGCCGCCGCgCGcaccgcguccuccucGACGGCc- -3'
miRNA:   3'- gGGCGuuCCGGUGGCG-GC---------------UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 30708 0.67 0.668692
Target:  5'- gCCCGCGGGaGCCccGgCGCCGGGCcGCc- -3'
miRNA:   3'- -GGGCGUUC-CGG--UgGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 67844 0.67 0.667718
Target:  5'- gCCGCAcucuccGGGCCgaGCUGCucgcggcaacuccCGGGCGGCGcGg -3'
miRNA:   3'- gGGCGU------UCCGG--UGGCG-------------GCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 104294 0.67 0.658936
Target:  5'- cCUCGCAGGcCCGCgCGCgcucaaaGAGCGcGCGGa -3'
miRNA:   3'- -GGGCGUUCcGGUG-GCGg------CUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 83500 0.67 0.658936
Target:  5'- -gCGCcAGGCgCGCgCGCCGGugGaaGCGGc -3'
miRNA:   3'- ggGCGuUCCG-GUG-GCGGCUugC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 49142 0.67 0.64916
Target:  5'- cCCCGCGcgcAGGUauuuguCCGCaaaGGcggccACGGCGGg -3'
miRNA:   3'- -GGGCGU---UCCGgu----GGCGg--CU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13826 0.67 0.62664
Target:  5'- aCCCGCAgcgucaGGGUCGacugcgucuccucgUCGCCGGcgucgcCGGCGGc -3'
miRNA:   3'- -GGGCGU------UCCGGU--------------GGCGGCUu-----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29956 0.67 0.628599
Target:  5'- gCCGCGAGGCgcuagaggcggcgCggugcGCCGCCGGcgcguccggcaGCGGCGc -3'
miRNA:   3'- gGGCGUUCCG-------------G-----UGGCGGCU-----------UGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.