Results 81 - 100 of 737 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 39441 | 0.76 | 0.210103 |
Target: 5'- gUCCGCAGGGCCccgaGCCuCCGcGCGGCGcGg -3' miRNA: 3'- -GGGCGUUCCGG----UGGcGGCuUGCCGC-C- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 116649 | 0.76 | 0.210103 |
Target: 5'- gCCCGCGcGcCCGCCGCCGAccugcuccGCGGCGc -3' miRNA: 3'- -GGGCGUuCcGGUGGCGGCU--------UGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 17645 | 0.76 | 0.210103 |
Target: 5'- aUCGCGAGGCCgaugaggaugGCgCGCCGcgUGGCGGg -3' miRNA: 3'- gGGCGUUCCGG----------UG-GCGGCuuGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 22784 | 0.76 | 0.210103 |
Target: 5'- cCCCGCGAGaaggggguuGUCGCgGCCG-GCGGCGGc -3' miRNA: 3'- -GGGCGUUC---------CGGUGgCGGCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2349 | 0.76 | 0.214608 |
Target: 5'- gUCCGCGaucugcgacauccAGGCCacgcGCCGCCGcAGCGGCGc -3' miRNA: 3'- -GGGCGU-------------UCCGG----UGGCGGC-UUGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 101137 | 0.76 | 0.215114 |
Target: 5'- uCgCGCGAGGCUGCCGC---GCGGCGGc -3' miRNA: 3'- -GgGCGUUCCGGUGGCGgcuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 35789 | 0.76 | 0.215114 |
Target: 5'- gCCCGCGGGcGCCAUggCGCgGGACGGCcuGGa -3' miRNA: 3'- -GGGCGUUC-CGGUG--GCGgCUUGCCG--CC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 121627 | 0.76 | 0.215114 |
Target: 5'- uCCCGCcgcucggcGGCCGCCGCCG-GCGagcGCGGg -3' miRNA: 3'- -GGGCGuu------CCGGUGGCGGCuUGC---CGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 126055 | 0.76 | 0.215114 |
Target: 5'- uCCCGCuccGGcGCCAgccgcCCGCCGGccuCGGCGGg -3' miRNA: 3'- -GGGCGu--UC-CGGU-----GGCGGCUu--GCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 23612 | 0.75 | 0.24736 |
Target: 5'- gUCGCc--GCCGCUGCCGGggcGCGGCGGg -3' miRNA: 3'- gGGCGuucCGGUGGCGGCU---UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 29250 | 0.75 | 0.24736 |
Target: 5'- gCCGCGcgacGGGCCGCCGCCGcugGAgGGCc- -3' miRNA: 3'- gGGCGU----UCCGGUGGCGGC---UUgCCGcc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 58975 | 0.75 | 0.24736 |
Target: 5'- gCCCGCGucgaAGGCCuCCa-CGGGCGGCGGu -3' miRNA: 3'- -GGGCGU----UCCGGuGGcgGCUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 98131 | 0.75 | 0.251373 |
Target: 5'- gCCGCGGcaccGGCgGCCGUCGGcggcaaggccgcggGCGGCGGg -3' miRNA: 3'- gGGCGUU----CCGgUGGCGGCU--------------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 60156 | 0.75 | 0.243964 |
Target: 5'- gCUGCAGGcGCCGCUGCCGugGaagcgcgucugcgccGCGGCGGa -3' miRNA: 3'- gGGCGUUC-CGGUGGCGGC--U---------------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 100102 | 0.75 | 0.241721 |
Target: 5'- gCCGCu--GCCGCCGCCcAGCGGCGc -3' miRNA: 3'- gGGCGuucCGGUGGCGGcUUGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 95076 | 0.75 | 0.241721 |
Target: 5'- gCCCGCGAGcGCgACCGC--GACGGCGa -3' miRNA: 3'- -GGGCGUUC-CGgUGGCGgcUUGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 11904 | 0.75 | 0.241721 |
Target: 5'- gCCCGCcgcGGGCCcgGCCcgGCCGGcggcuGCGGCGGc -3' miRNA: 3'- -GGGCGu--UCCGG--UGG--CGGCU-----UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 121476 | 0.75 | 0.241721 |
Target: 5'- cUCgGCGuaccGGCUGCCGCCacgGGGCGGCGGg -3' miRNA: 3'- -GGgCGUu---CCGGUGGCGG---CUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 70325 | 0.75 | 0.241721 |
Target: 5'- gCCGCAguAGGCgCACgCGUCGAGCGGgcCGGg -3' miRNA: 3'- gGGCGU--UCCG-GUG-GCGGCUUGCC--GCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 17846 | 0.75 | 0.253109 |
Target: 5'- uUCCGCAGGGCCucguaagaGCgGCCGGcCGGCaGGc -3' miRNA: 3'- -GGGCGUUCCGG--------UGgCGGCUuGCCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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