miRNA display CGI


Results 101 - 120 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 83856 0.75 0.271014
Target:  5'- cCCCGCuGGGCUggGCCggGCCGGACGcCGGg -3'
miRNA:   3'- -GGGCGuUCCGG--UGG--CGGCUUGCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 28802 0.75 0.253109
Target:  5'- gCCGCGgcGGaggcaGCCGCCGCCGAAgccgaGGCGGc -3'
miRNA:   3'- gGGCGU--UC-----CGGUGGCGGCUUg----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 46667 0.75 0.253109
Target:  5'- uUCCGCGcguuGGCCGCgCGCUccACGGCGGc -3'
miRNA:   3'- -GGGCGUu---CCGGUG-GCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 31318 0.75 0.241162
Target:  5'- gCCCGCGGGcgcgcucGCCGCCagcgcGCCGcuGCGGCGGc -3'
miRNA:   3'- -GGGCGUUC-------CGGUGG-----CGGCu-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 70325 0.75 0.241721
Target:  5'- gCCGCAguAGGCgCACgCGUCGAGCGGgcCGGg -3'
miRNA:   3'- gGGCGU--UCCG-GUG-GCGGCUUGCC--GCC- -5'
23844 3' -60.9 NC_005261.1 + 121476 0.75 0.241721
Target:  5'- cUCgGCGuaccGGCUGCCGCCacgGGGCGGCGGg -3'
miRNA:   3'- -GGgCGUu---CCGGUGGCGG---CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 11904 0.75 0.241721
Target:  5'- gCCCGCcgcGGGCCcgGCCcgGCCGGcggcuGCGGCGGc -3'
miRNA:   3'- -GGGCGu--UCCGG--UGG--CGGCU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 95076 0.75 0.241721
Target:  5'- gCCCGCGAGcGCgACCGC--GACGGCGa -3'
miRNA:   3'- -GGGCGUUC-CGgUGGCGgcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 100102 0.75 0.241721
Target:  5'- gCCGCu--GCCGCCGCCcAGCGGCGc -3'
miRNA:   3'- gGGCGuucCGGUGGCGGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 60156 0.75 0.243964
Target:  5'- gCUGCAGGcGCCGCUGCCGugGaagcgcgucugcgccGCGGCGGa -3'
miRNA:   3'- gGGCGUUC-CGGUGGCGGC--U---------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23612 0.75 0.24736
Target:  5'- gUCGCc--GCCGCUGCCGGggcGCGGCGGg -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCU---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29250 0.75 0.24736
Target:  5'- gCCGCGcgacGGGCCGCCGCCGcugGAgGGCc- -3'
miRNA:   3'- gGGCGU----UCCGGUGGCGGC---UUgCCGcc -5'
23844 3' -60.9 NC_005261.1 + 58975 0.75 0.24736
Target:  5'- gCCCGCGucgaAGGCCuCCa-CGGGCGGCGGu -3'
miRNA:   3'- -GGGCGU----UCCGGuGGcgGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 98131 0.75 0.251373
Target:  5'- gCCGCGGcaccGGCgGCCGUCGGcggcaaggccgcggGCGGCGGg -3'
miRNA:   3'- gGGCGUU----CCGgUGGCGGCU--------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 17846 0.75 0.253109
Target:  5'- uUCCGCAGGGCCucguaagaGCgGCCGGcCGGCaGGc -3'
miRNA:   3'- -GGGCGUUCCGG--------UGgCGGCUuGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 32265 0.74 0.283508
Target:  5'- gCCGCAcgccgaGGcGCCGCCGCUGGugcuggaGGCGGg -3'
miRNA:   3'- gGGCGU------UC-CGGUGGCGGCUug-----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 35728 0.74 0.282238
Target:  5'- cCCCGgcCGAGGCCACCuggGCCGAAgccagccgcgaaGGCGGc -3'
miRNA:   3'- -GGGC--GUUCCGGUGG---CGGCUUg-----------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 44860 0.74 0.277205
Target:  5'- gCCGCGAGGaagagCGCCGCCGcgAGCGccGCGGg -3'
miRNA:   3'- gGGCGUUCCg----GUGGCGGC--UUGC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 64699 0.74 0.277205
Target:  5'- gUCC-CGGGGCCGCCGCCGcgcACGGgcCGGu -3'
miRNA:   3'- -GGGcGUUCCGGUGGCGGCu--UGCC--GCC- -5'
23844 3' -60.9 NC_005261.1 + 96956 0.74 0.283508
Target:  5'- aUCgGCGGGGCaGCCGCCGGGCGcgauucacGCGGc -3'
miRNA:   3'- -GGgCGUUCCGgUGGCGGCUUGC--------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.