Results 121 - 140 of 737 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 5522 | 0.74 | 0.303766 |
Target: 5'- gCgGCGAGGCCGCCggcuucggcgcgcaGCgagacggggggcgccCGAGCGGCGGa -3' miRNA: 3'- gGgCGUUCCGGUGG--------------CG---------------GCUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 100039 | 0.74 | 0.305785 |
Target: 5'- gUCCGCGGGcgucagcucgagcgcGCCGCCGCCGccCGGgGGc -3' miRNA: 3'- -GGGCGUUC---------------CGGUGGCGGCuuGCCgCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 81614 | 0.74 | 0.309853 |
Target: 5'- gCCCGCGgcGGGUucagCACCGCCGcgAGCGGCc- -3' miRNA: 3'- -GGGCGU--UCCG----GUGGCGGC--UUGCCGcc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 92337 | 0.74 | 0.309853 |
Target: 5'- aUCCGC-GGGCCACCGgucaCGGugcaGGCGGg -3' miRNA: 3'- -GGGCGuUCCGGUGGCg---GCUug--CCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 60938 | 0.74 | 0.309853 |
Target: 5'- aCCCGC-GGGCCGUgGcCCGAGCGGCu- -3' miRNA: 3'- -GGGCGuUCCGGUGgC-GGCUUGCCGcc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 131977 | 0.74 | 0.296453 |
Target: 5'- gCCGCGcGGCCACCagGCCuucgcagucgcGGACGGCGa -3' miRNA: 3'- gGGCGUuCCGGUGG--CGG-----------CUUGCCGCc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 60032 | 0.74 | 0.296453 |
Target: 5'- gCCCGCcgccGUCGgCGCCGAcgGCGGCGGc -3' miRNA: 3'- -GGGCGuuc-CGGUgGCGGCU--UGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 73120 | 0.74 | 0.294482 |
Target: 5'- gCCCGCGuccgcgcgguccccGGGCCgggcucgcGCCGCCaGGCGGCGu -3' miRNA: 3'- -GGGCGU--------------UCCGG--------UGGCGGcUUGCCGCc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 37223 | 0.74 | 0.277205 |
Target: 5'- uCCCGC-GGGCUugCGCgGcGCGGCGc -3' miRNA: 3'- -GGGCGuUCCGGugGCGgCuUGCCGCc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 64699 | 0.74 | 0.277205 |
Target: 5'- gUCC-CGGGGCCGCCGCCGcgcACGGgcCGGu -3' miRNA: 3'- -GGGcGUUCCGGUGGCGGCu--UGCC--GCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 44860 | 0.74 | 0.277205 |
Target: 5'- gCCGCGAGGaagagCGCCGCCGcgAGCGccGCGGg -3' miRNA: 3'- gGGCGUUCCg----GUGGCGGC--UUGC--CGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 35728 | 0.74 | 0.282238 |
Target: 5'- cCCCGgcCGAGGCCACCuggGCCGAAgccagccgcgaaGGCGGc -3' miRNA: 3'- -GGGC--GUUCCGGUGG---CGGCUUg-----------CCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 32265 | 0.74 | 0.283508 |
Target: 5'- gCCGCAcgccgaGGcGCCGCCGCUGGugcuggaGGCGGg -3' miRNA: 3'- gGGCGU------UC-CGGUGGCGGCUug-----CCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 96956 | 0.74 | 0.283508 |
Target: 5'- aUCgGCGGGGCaGCCGCCGGGCGcgauucacGCGGc -3' miRNA: 3'- -GGgCGUUCCGgUGGCGGCUUGC--------CGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 135078 | 0.74 | 0.283508 |
Target: 5'- uCCgGCGgcGGGCuCGCgGCCcGGCGGCGGa -3' miRNA: 3'- -GGgCGU--UCCG-GUGgCGGcUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 59339 | 0.74 | 0.289277 |
Target: 5'- gCCCGCcGGGUCGCCGCCGucgccacGAgGGUGu -3' miRNA: 3'- -GGGCGuUCCGGUGGCGGC-------UUgCCGCc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 4303 | 0.74 | 0.289923 |
Target: 5'- cCCCGC--GGCCGCCGCguAGCGcGCGGc -3' miRNA: 3'- -GGGCGuuCCGGUGGCGgcUUGC-CGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 133162 | 0.74 | 0.289923 |
Target: 5'- gCCGUcGGcGUCGCCGCCGAcaaccGCGGCGc -3' miRNA: 3'- gGGCGuUC-CGGUGGCGGCU-----UGCCGCc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 26650 | 0.73 | 0.316723 |
Target: 5'- uCCUGCcccuGGGCCACaCGcCCGGAC-GCGGa -3' miRNA: 3'- -GGGCGu---UCCGGUG-GC-GGCUUGcCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 118867 | 0.73 | 0.316723 |
Target: 5'- gCCCGCGGcccuggccucGGCCACCGCgGGcgcGCuGGUGGc -3' miRNA: 3'- -GGGCGUU----------CCGGUGGCGgCU---UG-CCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home