miRNA display CGI


Results 61 - 80 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 137920 0.77 0.200384
Target:  5'- cCCCGCGagcGGGCC-CgGCUGcGGCGGCGGc -3'
miRNA:   3'- -GGGCGU---UCCGGuGgCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29795 0.77 0.200384
Target:  5'- aCCCG-GAGGCCGgCGCCGG-CGGCGcGg -3'
miRNA:   3'- -GGGCgUUCCGGUgGCGGCUuGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 237 0.77 0.200384
Target:  5'- cCCCGCGagcGGGCC-CgGCUGcGGCGGCGGc -3'
miRNA:   3'- -GGGCGU---UCCGGuGgCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 127795 0.77 0.200384
Target:  5'- gCgGC-GGGCCGgCGCCGcGGCGGCGGg -3'
miRNA:   3'- gGgCGuUCCGGUgGCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1378 0.77 0.205194
Target:  5'- gUCCGCGucccAGGCCA-CGCCGGgcgccgcggccGCGGCGGc -3'
miRNA:   3'- -GGGCGU----UCCGGUgGCGGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 54575 0.77 0.205194
Target:  5'- cUCCGCGucGGCCAgCGCCGAcugcGCGGUGa -3'
miRNA:   3'- -GGGCGUu-CCGGUgGCGGCU----UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 102971 0.77 0.205194
Target:  5'- gCCGCGGGcuCCGCCGCCGcgcgcgacACGGCGGc -3'
miRNA:   3'- gGGCGUUCc-GGUGGCGGCu-------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 115852 0.76 0.209608
Target:  5'- gCCCGCGcGGCCcCCGCCGAGgcgcgccCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGuGGCGGCUU-------GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 22784 0.76 0.210103
Target:  5'- cCCCGCGAGaaggggguuGUCGCgGCCG-GCGGCGGc -3'
miRNA:   3'- -GGGCGUUC---------CGGUGgCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 17645 0.76 0.210103
Target:  5'- aUCGCGAGGCCgaugaggaugGCgCGCCGcgUGGCGGg -3'
miRNA:   3'- gGGCGUUCCGG----------UG-GCGGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 116649 0.76 0.210103
Target:  5'- gCCCGCGcGcCCGCCGCCGAccugcuccGCGGCGc -3'
miRNA:   3'- -GGGCGUuCcGGUGGCGGCU--------UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 39441 0.76 0.210103
Target:  5'- gUCCGCAGGGCCccgaGCCuCCGcGCGGCGcGg -3'
miRNA:   3'- -GGGCGUUCCGG----UGGcGGCuUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 2349 0.76 0.214608
Target:  5'- gUCCGCGaucugcgacauccAGGCCacgcGCCGCCGcAGCGGCGc -3'
miRNA:   3'- -GGGCGU-------------UCCGG----UGGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 126055 0.76 0.215114
Target:  5'- uCCCGCuccGGcGCCAgccgcCCGCCGGccuCGGCGGg -3'
miRNA:   3'- -GGGCGu--UC-CGGU-----GGCGGCUu--GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121627 0.76 0.215114
Target:  5'- uCCCGCcgcucggcGGCCGCCGCCG-GCGagcGCGGg -3'
miRNA:   3'- -GGGCGuu------CCGGUGGCGGCuUGC---CGCC- -5'
23844 3' -60.9 NC_005261.1 + 35789 0.76 0.215114
Target:  5'- gCCCGCGGGcGCCAUggCGCgGGACGGCcuGGa -3'
miRNA:   3'- -GGGCGUUC-CGGUG--GCGgCUUGCCG--CC- -5'
23844 3' -60.9 NC_005261.1 + 101137 0.76 0.215114
Target:  5'- uCgCGCGAGGCUGCCGC---GCGGCGGc -3'
miRNA:   3'- -GgGCGUUCCGGUGGCGgcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 99867 0.76 0.220226
Target:  5'- gCCGCGc-GCCGCCGCCGcuCGGCGc -3'
miRNA:   3'- gGGCGUucCGGUGGCGGCuuGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 130568 0.76 0.220226
Target:  5'- gCCCGCcGGGCggaagCGCCGCCGcGCGGCc- -3'
miRNA:   3'- -GGGCGuUCCG-----GUGGCGGCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 2238 0.76 0.22178
Target:  5'- gCCGCGcaccggcggccacucAGGCCGCCggcgcucguccucGCCGGGCGGCGc -3'
miRNA:   3'- gGGCGU---------------UCCGGUGG-------------CGGCUUGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.