miRNA display CGI


Results 81 - 100 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 106244 0.76 0.230226
Target:  5'- gCCGCGcccuaccGGGCCgccgccgccgcuGCCGCCGGGCGGCc- -3'
miRNA:   3'- gGGCGU-------UCCGG------------UGGCGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 30173 0.76 0.230226
Target:  5'- gCCCGCcgcgcugcgcgccGAGGCgGCCGCCGcGCuggaGGCGGc -3'
miRNA:   3'- -GGGCG-------------UUCCGgUGGCGGCuUG----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 18931 0.76 0.230762
Target:  5'- aCCC-CAAGGCCG-CGCUGAA-GGCGGg -3'
miRNA:   3'- -GGGcGUUCCGGUgGCGGCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135037 0.76 0.230762
Target:  5'- gCgGCGAGGCCGaCGCCu-GCGGCGGc -3'
miRNA:   3'- gGgCGUUCCGGUgGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 61632 0.76 0.236188
Target:  5'- cCCCGCu-GGCCGcCCGuCCGc-CGGCGGa -3'
miRNA:   3'- -GGGCGuuCCGGU-GGC-GGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 21202 0.76 0.236188
Target:  5'- gCCGCGGacgcuGGCC-CCgGCCGcGACGGCGGg -3'
miRNA:   3'- gGGCGUU-----CCGGuGG-CGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 103582 0.76 0.236188
Target:  5'- gCCCGCGccgucGCuCGCCGCCGuggccGCGGCGGc -3'
miRNA:   3'- -GGGCGUuc---CG-GUGGCGGCu----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 80023 0.76 0.236188
Target:  5'- aCCCGCuuguuGGCgucgccguCGCCGCCGucgccacuGGCGGCGGg -3'
miRNA:   3'- -GGGCGuu---CCG--------GUGGCGGC--------UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 31474 0.76 0.236188
Target:  5'- gCCUGaguGGCCGCCGgUGcGCGGCGGg -3'
miRNA:   3'- -GGGCguuCCGGUGGCgGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 31318 0.75 0.241162
Target:  5'- gCCCGCGGGcgcgcucGCCGCCagcgcGCCGcuGCGGCGGc -3'
miRNA:   3'- -GGGCGUUC-------CGGUGG-----CGGCu-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 100102 0.75 0.241721
Target:  5'- gCCGCu--GCCGCCGCCcAGCGGCGc -3'
miRNA:   3'- gGGCGuucCGGUGGCGGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 95076 0.75 0.241721
Target:  5'- gCCCGCGAGcGCgACCGC--GACGGCGa -3'
miRNA:   3'- -GGGCGUUC-CGgUGGCGgcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 11904 0.75 0.241721
Target:  5'- gCCCGCcgcGGGCCcgGCCcgGCCGGcggcuGCGGCGGc -3'
miRNA:   3'- -GGGCGu--UCCGG--UGG--CGGCU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121476 0.75 0.241721
Target:  5'- cUCgGCGuaccGGCUGCCGCCacgGGGCGGCGGg -3'
miRNA:   3'- -GGgCGUu---CCGGUGGCGG---CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 70325 0.75 0.241721
Target:  5'- gCCGCAguAGGCgCACgCGUCGAGCGGgcCGGg -3'
miRNA:   3'- gGGCGU--UCCG-GUG-GCGGCUUGCC--GCC- -5'
23844 3' -60.9 NC_005261.1 + 60156 0.75 0.243964
Target:  5'- gCUGCAGGcGCCGCUGCCGugGaagcgcgucugcgccGCGGCGGa -3'
miRNA:   3'- gGGCGUUC-CGGUGGCGGC--U---------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23612 0.75 0.24736
Target:  5'- gUCGCc--GCCGCUGCCGGggcGCGGCGGg -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCU---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29250 0.75 0.24736
Target:  5'- gCCGCGcgacGGGCCGCCGCCGcugGAgGGCc- -3'
miRNA:   3'- gGGCGU----UCCGGUGGCGGC---UUgCCGcc -5'
23844 3' -60.9 NC_005261.1 + 58975 0.75 0.24736
Target:  5'- gCCCGCGucgaAGGCCuCCa-CGGGCGGCGGu -3'
miRNA:   3'- -GGGCGU----UCCGGuGGcgGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 98131 0.75 0.251373
Target:  5'- gCCGCGGcaccGGCgGCCGUCGGcggcaaggccgcggGCGGCGGg -3'
miRNA:   3'- gGGCGUU----CCGgUGGCGGCU--------------UGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.