miRNA display CGI


Results 101 - 120 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 74688 0.75 0.253109
Target:  5'- aCCGCGcgggagcuGGCCGCCGCgCGGGC-GCGGa -3'
miRNA:   3'- gGGCGUu-------CCGGUGGCG-GCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 46986 0.75 0.253109
Target:  5'- gCCCGCc-GGCagcgcgcgccgCGCCGCCGcgauGCGGCGGu -3'
miRNA:   3'- -GGGCGuuCCG-----------GUGGCGGCu---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28802 0.75 0.253109
Target:  5'- gCCGCGgcGGaggcaGCCGCCGCCGAAgccgaGGCGGc -3'
miRNA:   3'- gGGCGU--UC-----CGGUGGCGGCUUg----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 46667 0.75 0.253109
Target:  5'- uUCCGCGcguuGGCCGCgCGCUccACGGCGGc -3'
miRNA:   3'- -GGGCGUu---CCGGUG-GCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 17846 0.75 0.253109
Target:  5'- uUCCGCAGGGCCucguaagaGCgGCCGGcCGGCaGGc -3'
miRNA:   3'- -GGGCGUUCCGG--------UGgCGGCUuGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 42675 0.75 0.258376
Target:  5'- gCgGCcGGGCCGCCGCCGGcagccgcGCGGCc- -3'
miRNA:   3'- gGgCGuUCCGGUGGCGGCU-------UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 87946 0.75 0.258967
Target:  5'- gCCgCGCGccGCCAcggcCCGCCG-GCGGCGGg -3'
miRNA:   3'- -GG-GCGUucCGGU----GGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 75555 0.75 0.258967
Target:  5'- uCCUGCc-GGCCAUccccggggCGCUGGGCGGCGGc -3'
miRNA:   3'- -GGGCGuuCCGGUG--------GCGGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1545 0.75 0.258967
Target:  5'- gCCCGCAggccAGGUaCACCgGCCGcAGCGGCGc -3'
miRNA:   3'- -GGGCGU----UCCG-GUGG-CGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 31671 0.75 0.264935
Target:  5'- gCCUGCGGcuGGCCGCgGCgCG-GCGGCGGc -3'
miRNA:   3'- -GGGCGUU--CCGGUGgCG-GCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 93820 0.75 0.264935
Target:  5'- gCCGcCAccGCCgcaGCCGCCGGGCGGCGc -3'
miRNA:   3'- gGGC-GUucCGG---UGGCGGCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 109800 0.75 0.264935
Target:  5'- gCUGCGAcGGCCGgCGCCGcuuccgccGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGGUgGCGGCu-------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 125706 0.75 0.264935
Target:  5'- gCCCgGCGAcGGCCGCCGCgGGcuCGGCuGGg -3'
miRNA:   3'- -GGG-CGUU-CCGGUGGCGgCUu-GCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 83856 0.75 0.271014
Target:  5'- cCCCGCuGGGCUggGCCggGCCGGACGcCGGg -3'
miRNA:   3'- -GGGCGuUCCGG--UGG--CGGCUUGCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 133095 0.75 0.271014
Target:  5'- -gCGCAAGGCCGCCGucaaCCGcGCGGCc- -3'
miRNA:   3'- ggGCGUUCCGGUGGC----GGCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 37223 0.74 0.277205
Target:  5'- uCCCGC-GGGCUugCGCgGcGCGGCGc -3'
miRNA:   3'- -GGGCGuUCCGGugGCGgCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 64699 0.74 0.277205
Target:  5'- gUCC-CGGGGCCGCCGCCGcgcACGGgcCGGu -3'
miRNA:   3'- -GGGcGUUCCGGUGGCGGCu--UGCC--GCC- -5'
23844 3' -60.9 NC_005261.1 + 44860 0.74 0.277205
Target:  5'- gCCGCGAGGaagagCGCCGCCGcgAGCGccGCGGg -3'
miRNA:   3'- gGGCGUUCCg----GUGGCGGC--UUGC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 35728 0.74 0.282238
Target:  5'- cCCCGgcCGAGGCCACCuggGCCGAAgccagccgcgaaGGCGGc -3'
miRNA:   3'- -GGGC--GUUCCGGUGG---CGGCUUg-----------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 96956 0.74 0.283508
Target:  5'- aUCgGCGGGGCaGCCGCCGGGCGcgauucacGCGGc -3'
miRNA:   3'- -GGgCGUUCCGgUGGCGGCUUGC--------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.