miRNA display CGI


Results 121 - 140 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 96956 0.74 0.283508
Target:  5'- aUCgGCGGGGCaGCCGCCGGGCGcgauucacGCGGc -3'
miRNA:   3'- -GGgCGUUCCGgUGGCGGCUUGC--------CGCC- -5'
23844 3' -60.9 NC_005261.1 + 135078 0.74 0.283508
Target:  5'- uCCgGCGgcGGGCuCGCgGCCcGGCGGCGGa -3'
miRNA:   3'- -GGgCGU--UCCG-GUGgCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 59339 0.74 0.289277
Target:  5'- gCCCGCcGGGUCGCCGCCGucgccacGAgGGUGu -3'
miRNA:   3'- -GGGCGuUCCGGUGGCGGC-------UUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 133162 0.74 0.289923
Target:  5'- gCCGUcGGcGUCGCCGCCGAcaaccGCGGCGc -3'
miRNA:   3'- gGGCGuUC-CGGUGGCGGCU-----UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 4303 0.74 0.289923
Target:  5'- cCCCGC--GGCCGCCGCguAGCGcGCGGc -3'
miRNA:   3'- -GGGCGuuCCGGUGGCGgcUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 73120 0.74 0.294482
Target:  5'- gCCCGCGuccgcgcgguccccGGGCCgggcucgcGCCGCCaGGCGGCGu -3'
miRNA:   3'- -GGGCGU--------------UCCGG--------UGGCGGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 60032 0.74 0.296453
Target:  5'- gCCCGCcgccGUCGgCGCCGAcgGCGGCGGc -3'
miRNA:   3'- -GGGCGuuc-CGGUgGCGGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 131977 0.74 0.296453
Target:  5'- gCCGCGcGGCCACCagGCCuucgcagucgcGGACGGCGa -3'
miRNA:   3'- gGGCGUuCCGGUGG--CGG-----------CUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 2582 0.74 0.296453
Target:  5'- cCCCGgGcGGCacgcggcggaaGCCGCCGucgGCGGCGGg -3'
miRNA:   3'- -GGGCgUuCCGg----------UGGCGGCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 73588 0.74 0.296453
Target:  5'- cCCCGCGgcggAGGCgGCgGCCGcgAGCGcGCGGc -3'
miRNA:   3'- -GGGCGU----UCCGgUGgCGGC--UUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 35033 0.74 0.303096
Target:  5'- gUCGCu-GGCgCGCCGCCcuAACGGCGGc -3'
miRNA:   3'- gGGCGuuCCG-GUGGCGGc-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 123894 0.74 0.303096
Target:  5'- uUCGCGgaAGGCCGCCGCUGugggguGCGGCc- -3'
miRNA:   3'- gGGCGU--UCCGGUGGCGGCu-----UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 122993 0.74 0.303096
Target:  5'- uCCUGCAGGGCCACUacgGCCGcGGCcGUGGc -3'
miRNA:   3'- -GGGCGUUCCGGUGG---CGGC-UUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 5522 0.74 0.303766
Target:  5'- gCgGCGAGGCCGCCggcuucggcgcgcaGCgagacggggggcgccCGAGCGGCGGa -3'
miRNA:   3'- gGgCGUUCCGGUGG--------------CG---------------GCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 100039 0.74 0.305785
Target:  5'- gUCCGCGGGcgucagcucgagcgcGCCGCCGCCGccCGGgGGc -3'
miRNA:   3'- -GGGCGUUC---------------CGGUGGCGGCuuGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 81614 0.74 0.309853
Target:  5'- gCCCGCGgcGGGUucagCACCGCCGcgAGCGGCc- -3'
miRNA:   3'- -GGGCGU--UCCG----GUGGCGGC--UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 92337 0.74 0.309853
Target:  5'- aUCCGC-GGGCCACCGgucaCGGugcaGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGGUGGCg---GCUug--CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 60938 0.74 0.309853
Target:  5'- aCCCGC-GGGCCGUgGcCCGAGCGGCu- -3'
miRNA:   3'- -GGGCGuUCCGGUGgC-GGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 44916 0.73 0.316031
Target:  5'- cCCaCGCcGGGCCcaGCCGCCGAGgagaguuCGGCGc -3'
miRNA:   3'- -GG-GCGuUCCGG--UGGCGGCUU-------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 118867 0.73 0.316723
Target:  5'- gCCCGCGGcccuggccucGGCCACCGCgGGcgcGCuGGUGGc -3'
miRNA:   3'- -GGGCGUU----------CCGGUGGCGgCU---UG-CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.