miRNA display CGI


Results 141 - 160 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 118867 0.73 0.316723
Target:  5'- gCCCGCGGcccuggccucGGCCACCGCgGGcgcGCuGGUGGc -3'
miRNA:   3'- -GGGCGUU----------CCGGUGGCGgCU---UG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 26650 0.73 0.316723
Target:  5'- uCCUGCcccuGGGCCACaCGcCCGGAC-GCGGa -3'
miRNA:   3'- -GGGCGu---UCCGGUG-GC-GGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 68543 0.73 0.318807
Target:  5'- gCCCGCGcgcccccugcugcgcGGGCUcuuugagcgcgucGCCGCCGA--GGCGGg -3'
miRNA:   3'- -GGGCGU---------------UCCGG-------------UGGCGGCUugCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 124755 0.73 0.323709
Target:  5'- gCCGCAGcGGCCGCCuccagGCUGAggaGCGGgGGc -3'
miRNA:   3'- gGGCGUU-CCGGUGG-----CGGCU---UGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 96120 0.73 0.323709
Target:  5'- gUCGCu-GGCCAUgGUCGAccuGCGGCGGc -3'
miRNA:   3'- gGGCGuuCCGGUGgCGGCU---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 80113 0.73 0.323709
Target:  5'- aCCgGCuuGGgCGCCGCgGcAGCGGCGGc -3'
miRNA:   3'- -GGgCGuuCCgGUGGCGgC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 77150 0.73 0.323709
Target:  5'- aCCGUcucGcGCCGCCGCCGcgaGGCGGg -3'
miRNA:   3'- gGGCGuu-C-CGGUGGCGGCuugCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 116006 0.73 0.323709
Target:  5'- gCCCGaggcGGCCugaGCCGCCGA-CGGCGc -3'
miRNA:   3'- -GGGCguu-CCGG---UGGCGGCUuGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 31723 0.73 0.328666
Target:  5'- cCCCGCGAacuggccgcgcgauGGCCcgGCCGUCGGGCaGGCGc -3'
miRNA:   3'- -GGGCGUU--------------CCGG--UGGCGGCUUG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 101456 0.73 0.330808
Target:  5'- -gCGCu-GGCCccagcGCCGCCG-GCGGCGGc -3'
miRNA:   3'- ggGCGuuCCGG-----UGGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 87787 0.73 0.330808
Target:  5'- aCCGUcuuGGCCGCCGCguccaUGGcCGGCGGg -3'
miRNA:   3'- gGGCGuu-CCGGUGGCG-----GCUuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 110154 0.73 0.330808
Target:  5'- aUCgGCAuGGCCGCCGCCaccgcgccccccGGGCGGCa- -3'
miRNA:   3'- -GGgCGUuCCGGUGGCGG------------CUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 106578 0.73 0.330808
Target:  5'- gCCC-CGGGGCCGCCGC---GCGGCGc -3'
miRNA:   3'- -GGGcGUUCCGGUGGCGgcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 103676 0.73 0.330808
Target:  5'- gCCCGCGAGGCCGagCGCCcguuuauAGCGGCc- -3'
miRNA:   3'- -GGGCGUUCCGGUg-GCGGc------UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 90382 0.73 0.330808
Target:  5'- gCgGCGAGGCC-CCGCCG-GCGG-GGc -3'
miRNA:   3'- gGgCGUUCCGGuGGCGGCuUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 123059 0.73 0.33296
Target:  5'- gCCCGCcgcucgauGAGGCCccgagagGCgGCCGGccacgccauuucgccGCGGCGGg -3'
miRNA:   3'- -GGGCG--------UUCCGG-------UGgCGGCU---------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 71606 0.73 0.337295
Target:  5'- gCCCGCc--GCCGCgGCCcgggcgcgggcccGGGCGGCGGg -3'
miRNA:   3'- -GGGCGuucCGGUGgCGG-------------CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 36953 0.73 0.338021
Target:  5'- -gCGCAAGGC--CCGCCGcGCGGCGc -3'
miRNA:   3'- ggGCGUUCCGguGGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 55424 0.73 0.338021
Target:  5'- gCCgGCuGGcGCCACCGCgagcccucCGAGCGGCGcGg -3'
miRNA:   3'- -GGgCGuUC-CGGUGGCG--------GCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 119006 0.73 0.338021
Target:  5'- gCCUGCuGGGCCcgcGCCGaCGAAUGaGCGGa -3'
miRNA:   3'- -GGGCGuUCCGG---UGGCgGCUUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.