miRNA display CGI


Results 161 - 180 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 119006 0.73 0.338021
Target:  5'- gCCUGCuGGGCCcgcGCCGaCGAAUGaGCGGa -3'
miRNA:   3'- -GGGCGuUCCGG---UGGCgGCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 55424 0.73 0.338021
Target:  5'- gCCgGCuGGcGCCACCGCgagcccucCGAGCGGCGcGg -3'
miRNA:   3'- -GGgCGuUC-CGGUGGCG--------GCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 36953 0.73 0.338021
Target:  5'- -gCGCAAGGC--CCGCCGcGCGGCGc -3'
miRNA:   3'- ggGCGUUCCGguGGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 4417 0.73 0.338021
Target:  5'- gCUGCcGGGCCAggccUCGCCGGAgGGCGu -3'
miRNA:   3'- gGGCGuUCCGGU----GGCGGCUUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 104958 0.73 0.338749
Target:  5'- gCCGCGcAGGCCGcaacagcguccucccCCGCCccggcgcccagcgcGGGCGGCGGu -3'
miRNA:   3'- gGGCGU-UCCGGU---------------GGCGG--------------CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3375 0.73 0.343138
Target:  5'- gCCGCGAgcgcGGCCGCCaGCCGcgccggcacuuccgcCGGCGGg -3'
miRNA:   3'- gGGCGUU----CCGGUGG-CGGCuu-------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 61538 0.73 0.34461
Target:  5'- uCCgGCAAGcGCCgcggcGCCGCCGAcgaucugAUGGUGGc -3'
miRNA:   3'- -GGgCGUUC-CGG-----UGGCGGCU-------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 131748 0.73 0.345348
Target:  5'- -aCGCGGacGGCaCGCCgGCCGGcGCGGCGGg -3'
miRNA:   3'- ggGCGUU--CCG-GUGG-CGGCU-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 56130 0.73 0.345348
Target:  5'- gCCGCAGGGCggggggCGCgGgCCGAggguggcggcaGCGGCGGg -3'
miRNA:   3'- gGGCGUUCCG------GUGgC-GGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 138018 0.73 0.345348
Target:  5'- gCCCGCAGcccGG-CGCgGCCcGGCGGCGGu -3'
miRNA:   3'- -GGGCGUU---CCgGUGgCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134979 0.73 0.345348
Target:  5'- aCgGCGAGGacgggGCCGCCGGggcgccccuggcGCGGCGGg -3'
miRNA:   3'- gGgCGUUCCgg---UGGCGGCU------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 97187 0.73 0.345348
Target:  5'- gCCgGCcGGGCCGCgGCCGGaaGCGccGCGGc -3'
miRNA:   3'- -GGgCGuUCCGGUGgCGGCU--UGC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 74811 0.73 0.345348
Target:  5'- gCCCGCGuggcggAGGUgGCCGCCGuGCucGCGGa -3'
miRNA:   3'- -GGGCGU------UCCGgUGGCGGCuUGc-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 347 0.73 0.345348
Target:  5'- gCCCGCAGcccGG-CGCgGCCcGGCGGCGGu -3'
miRNA:   3'- -GGGCGUU---CCgGUGgCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135215 0.73 0.345348
Target:  5'- -gCGCAgaGGGCCACgGCCGAGC-GCGu -3'
miRNA:   3'- ggGCGU--UCCGGUGgCGGCUUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 113827 0.73 0.345348
Target:  5'- uUCGCAAGGCCACCaaC-AACGGCGu -3'
miRNA:   3'- gGGCGUUCCGGUGGcgGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 23308 0.73 0.352789
Target:  5'- aCCCGUAuGGCCgagcagaaagaaGCCGaCGAGCGcGCGGc -3'
miRNA:   3'- -GGGCGUuCCGG------------UGGCgGCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 34354 0.73 0.352789
Target:  5'- gCCGaCGGGGCCgGgCGCCGcGCGGCGc -3'
miRNA:   3'- gGGC-GUUCCGG-UgGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 43142 0.73 0.352789
Target:  5'- gCgCGCGcGGCCugcgcGCCGCCGAcaucGCGGCGc -3'
miRNA:   3'- -GgGCGUuCCGG-----UGGCGGCU----UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 63439 0.73 0.352789
Target:  5'- gCCgGCGuAGGCCGcgcCCGCCGAGCGcccGCGa -3'
miRNA:   3'- -GGgCGU-UCCGGU---GGCGGCUUGC---CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.