miRNA display CGI


Results 81 - 100 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 43773 0.66 0.707369
Target:  5'- gCUCGUggGGCgGCgCGCgGAggGCGccGCGGg -3'
miRNA:   3'- -GGGCGuuCCGgUG-GCGgCU--UGC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 50174 0.66 0.707369
Target:  5'- aUCCGC-GGG-CACCGCCGcAGCaGCcGGu -3'
miRNA:   3'- -GGGCGuUCCgGUGGCGGC-UUGcCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 101542 0.66 0.707369
Target:  5'- gCCGCcucGGCCGCCacgaccucGCCGAGgaugcgcuCGGCGc -3'
miRNA:   3'- gGGCGuu-CCGGUGG--------CGGCUU--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 32536 0.66 0.707369
Target:  5'- cCCCgGCcccGGCCGCgGCgCGGGcCGGCGc -3'
miRNA:   3'- -GGG-CGuu-CCGGUGgCG-GCUU-GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 39546 0.66 0.707369
Target:  5'- gCCGCca-GCC-CCGCgCGcgcGCGGCGGu -3'
miRNA:   3'- gGGCGuucCGGuGGCG-GCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 68998 0.66 0.707369
Target:  5'- gCCGCGcGGgCGCCGCggcuucguuggCGAGuccgUGGCGGa -3'
miRNA:   3'- gGGCGUuCCgGUGGCG-----------GCUU----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 118817 0.66 0.707369
Target:  5'- gUCUGCGcccuGGGCgcggCACUGCCGcucuGCGGCGcGg -3'
miRNA:   3'- -GGGCGU----UCCG----GUGGCGGCu---UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 130235 0.66 0.707369
Target:  5'- gCCCGCucAGG-CGCCGCgCcAGCGGCu- -3'
miRNA:   3'- -GGGCGu-UCCgGUGGCG-GcUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 122711 0.66 0.707369
Target:  5'- gCCGCc-GGCCgcGCCGUCGAuguucacguCGGCGc -3'
miRNA:   3'- gGGCGuuCCGG--UGGCGGCUu--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 127491 0.66 0.707369
Target:  5'- -aCGCuggcGGCUGCCuGCCGGGCguacucGGCGGc -3'
miRNA:   3'- ggGCGuu--CCGGUGG-CGGCUUG------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 127636 0.66 0.707369
Target:  5'- -aCGCGAcGGCgGCggCGCCGGgggGCGcGCGGg -3'
miRNA:   3'- ggGCGUU-CCGgUG--GCGGCU---UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 75595 0.66 0.707369
Target:  5'- gCUCGCGcGcGCCGCgGaCgCGGACGGCGu -3'
miRNA:   3'- -GGGCGUuC-CGGUGgC-G-GCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 52686 0.66 0.707369
Target:  5'- cCCUGCucgcGGGCgCGCCGCUGc-CGGCc- -3'
miRNA:   3'- -GGGCGu---UCCG-GUGGCGGCuuGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 112244 0.66 0.704494
Target:  5'- gCCGUgGAGGCCAUcaccacggaggucgCGCgGAuccugcucaaccGCGGCGGg -3'
miRNA:   3'- gGGCG-UUCCGGUG--------------GCGgCU------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 65588 0.66 0.697768
Target:  5'- gUCCGCGAGcucCUGCuCGCCGGgguCGGCGa -3'
miRNA:   3'- -GGGCGUUCc--GGUG-GCGGCUu--GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 51308 0.66 0.697768
Target:  5'- cCUCGCGcacgccGGcGCCGCCGCCGccuuCGuCGGg -3'
miRNA:   3'- -GGGCGU------UC-CGGUGGCGGCuu--GCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 37411 0.66 0.697768
Target:  5'- -gCGUAcuGGGCCAaccccuaCGCCGuGGCGcGCGGg -3'
miRNA:   3'- ggGCGU--UCCGGUg------GCGGC-UUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 49089 0.66 0.697768
Target:  5'- gCCGC-GGGC--CCGCUGAGCGcGCGc -3'
miRNA:   3'- gGGCGuUCCGguGGCGGCUUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 23571 0.66 0.697768
Target:  5'- --gGCAGGGCUgGCCGUgGcucauGGCGGCGGu -3'
miRNA:   3'- gggCGUUCCGG-UGGCGgC-----UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 69482 0.66 0.697768
Target:  5'- aUCCGCGcgaugcuGGUgCACCuguacGCCG-GCGGCGGg -3'
miRNA:   3'- -GGGCGUu------CCG-GUGG-----CGGCuUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.