miRNA display CGI


Results 121 - 140 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 74906 0.66 0.688116
Target:  5'- gCCCGCGcuGGCCGCgCGggGGAgGGCGa -3'
miRNA:   3'- -GGGCGUu-CCGGUG-GCggCUUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 70948 0.66 0.688116
Target:  5'- gUCCGCcGGgaacGCCGaCGCCGcGACGGCGa -3'
miRNA:   3'- -GGGCGuUC----CGGUgGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 103912 0.66 0.688116
Target:  5'- aCCCGC---GCCGCCagGUCGGgcGCGGCGu -3'
miRNA:   3'- -GGGCGuucCGGUGG--CGGCU--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 461 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 70707 0.66 0.687148
Target:  5'- gCCCGCGcGGgCACgGCCGAgagcacguccagcACGuGCGc -3'
miRNA:   3'- -GGGCGUuCCgGUGgCGGCU-------------UGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 74405 0.66 0.687148
Target:  5'- cCCCGUuuucGGCCGCgggcgggaggGCCGAGgagagcgccccccCGGCGGg -3'
miRNA:   3'- -GGGCGuu--CCGGUGg---------CGGCUU-------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 15915 0.67 0.682304
Target:  5'- cCCCGCGcagccgGGGCCgggGCCggggcccgggcaggaGCCGGGggcgagUGGCGGg -3'
miRNA:   3'- -GGGCGU------UCCGG---UGG---------------CGGCUU------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 115015 0.67 0.681334
Target:  5'- cCCCGCgGAGGCCucgucccaauaguCUGCCagcacccuggcgaaGGGgGGCGGg -3'
miRNA:   3'- -GGGCG-UUCCGGu------------GGCGG--------------CUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 44420 0.67 0.678421
Target:  5'- cCCCGCGuacGCCGacgaCGUgGAGCGGCu- -3'
miRNA:   3'- -GGGCGUuc-CGGUg---GCGgCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 96422 0.67 0.678421
Target:  5'- gCCCGUGAGaaCUugCGUugcgacguuuauUGAGCGGCGGg -3'
miRNA:   3'- -GGGCGUUCc-GGugGCG------------GCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 55689 0.67 0.678421
Target:  5'- gCCaGCAcggcGGCCACgGCCGcuugGGCGGc -3'
miRNA:   3'- gGG-CGUu---CCGGUGgCGGCuug-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 106519 0.67 0.678421
Target:  5'- cUCCaGCAGcGCCagcACCGCCuccucGGCGGCGGc -3'
miRNA:   3'- -GGG-CGUUcCGG---UGGCGGc----UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 81786 0.67 0.678421
Target:  5'- gCUCGCGGauauauuGCCaagcgaGCCGCUGcGCGGCGGu -3'
miRNA:   3'- -GGGCGUUc------CGG------UGGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 38912 0.67 0.678421
Target:  5'- uCCgGCGcgcGGGcCCGCgCGCCaAGcCGGCGGc -3'
miRNA:   3'- -GGgCGU---UCC-GGUG-GCGGcUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 128331 0.67 0.678421
Target:  5'- gCCUGCGGGGgCuCCGa-GAGCGGCa- -3'
miRNA:   3'- -GGGCGUUCCgGuGGCggCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 10096 0.67 0.678421
Target:  5'- cCCCGCcgcGCC-CCGgC-AGCGGCGGc -3'
miRNA:   3'- -GGGCGuucCGGuGGCgGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3847 0.67 0.678421
Target:  5'- gCgGCAgcGGcGCCGgCGCCGcGCGGcCGGc -3'
miRNA:   3'- gGgCGU--UC-CGGUgGCGGCuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 15477 0.67 0.678421
Target:  5'- aCCGCGGcGGaCACgCGCCGcucgcuGCGGgCGGg -3'
miRNA:   3'- gGGCGUU-CCgGUG-GCGGCu-----UGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 128052 0.67 0.678421
Target:  5'- aCCUGUGgaaccGGGCCAUgG-CGGGCGGgCGGg -3'
miRNA:   3'- -GGGCGU-----UCCGGUGgCgGCUUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 104392 0.67 0.678421
Target:  5'- nCCGaGAGGCgCGCCauaaagcgcGCCGAaACGGCGc -3'
miRNA:   3'- gGGCgUUCCG-GUGG---------CGGCU-UGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.