miRNA display CGI


Results 141 - 160 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 107746 0.67 0.678421
Target:  5'- gCCGCGggggGGGCCACgccccagcgcuCGCUG-GCGcGCGGu -3'
miRNA:   3'- gGGCGU----UCCGGUG-----------GCGGCuUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 128052 0.67 0.678421
Target:  5'- aCCUGUGgaaccGGGCCAUgG-CGGGCGGgCGGg -3'
miRNA:   3'- -GGGCGU-----UCCGGUGgCgGCUUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 104392 0.67 0.678421
Target:  5'- nCCGaGAGGCgCGCCauaaagcgcGCCGAaACGGCGc -3'
miRNA:   3'- gGGCgUUCCG-GUGG---------CGGCU-UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 12028 0.67 0.67745
Target:  5'- gCCCGCGAcgcgcucGaGCC-CCaGCCGGAgcacguacCGGCGGu -3'
miRNA:   3'- -GGGCGUU-------C-CGGuGG-CGGCUU--------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 50113 0.67 0.67745
Target:  5'- gCCgCGCAGGGCCGCCagcagguccacaaGCUGuGCGuuGGc -3'
miRNA:   3'- -GG-GCGUUCCGGUGG-------------CGGCuUGCcgCC- -5'
23844 3' -60.9 NC_005261.1 + 1908 0.67 0.668692
Target:  5'- gCCGCucAGGCCAgCGC---GCGGCGc -3'
miRNA:   3'- gGGCGu-UCCGGUgGCGgcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 33415 0.67 0.668692
Target:  5'- gCCGCA--GCCGCCGCCGcAGCcGCc- -3'
miRNA:   3'- gGGCGUucCGGUGGCGGC-UUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 33391 0.67 0.668692
Target:  5'- gCCGCA--GCCGCCGCCGcAGCcGCc- -3'
miRNA:   3'- gGGCGUucCGGUGGCGGC-UUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 30708 0.67 0.668692
Target:  5'- gCCCGCGGGaGCCccGgCGCCGGGCcGCc- -3'
miRNA:   3'- -GGGCGUUC-CGG--UgGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 32001 0.67 0.668692
Target:  5'- gCCCGU---GCCGCCGCgCGAGuacCGGCa- -3'
miRNA:   3'- -GGGCGuucCGGUGGCG-GCUU---GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 12207 0.67 0.668692
Target:  5'- gCCGCcGGuGCCGCCGCCGcuGCuGCc- -3'
miRNA:   3'- gGGCGuUC-CGGUGGCGGCu-UGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 63053 0.67 0.668692
Target:  5'- uCgCGCAgcAGcGCCGCguCGCUGGcgcacaGCGGCGGg -3'
miRNA:   3'- -GgGCGU--UC-CGGUG--GCGGCU------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135109 0.67 0.668692
Target:  5'- -gCGCGAGGCgGaccccgcgucuCCGCaGcGCGGCGGg -3'
miRNA:   3'- ggGCGUUCCGgU-----------GGCGgCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 95377 0.67 0.668692
Target:  5'- uCUCGCGGccccccGGCgCGCCGCuCGcggccaucACGGCGGa -3'
miRNA:   3'- -GGGCGUU------CCG-GUGGCG-GCu-------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134936 0.67 0.668692
Target:  5'- aCCGCgGAGGaCGa-GCCGAugGGCGa -3'
miRNA:   3'- gGGCG-UUCCgGUggCGGCUugCCGCc -5'
23844 3' -60.9 NC_005261.1 + 129284 0.67 0.668692
Target:  5'- cCCCGCGccGCC-CCGCCcgccccCGGCGc -3'
miRNA:   3'- -GGGCGUucCGGuGGCGGcuu---GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 55802 0.67 0.668692
Target:  5'- -gCGCGcGGCCuucGCCGCCGuaaaGGCGu -3'
miRNA:   3'- ggGCGUuCCGG---UGGCGGCuug-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 33439 0.67 0.668692
Target:  5'- gCCGCA--GCCGCCGCCGcAGCcGCc- -3'
miRNA:   3'- gGGCGUucCGGUGGCGGC-UUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 67844 0.67 0.667718
Target:  5'- gCCGCAcucuccGGGCCgaGCUGCucgcggcaacuccCGGGCGGCGcGg -3'
miRNA:   3'- gGGCGU------UCCGG--UGGCG-------------GCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 34929 0.67 0.667718
Target:  5'- gCCaCGCGggGGGCgGCCGgcgcgacCCGGGCccGGCGGc -3'
miRNA:   3'- -GG-GCGU--UCCGgUGGC-------GGCUUG--CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.