miRNA display CGI


Results 61 - 80 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 10506 0.71 0.42471
Target:  5'- -gCGCGcGGCCGCCGCUGcgggccccGCGGCGc -3'
miRNA:   3'- ggGCGUuCCGGUGGCGGCu-------UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 10883 0.68 0.58077
Target:  5'- uCCC-CGAGcCCGgCGCC-AACGGCGGc -3'
miRNA:   3'- -GGGcGUUCcGGUgGCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 10910 0.66 0.716912
Target:  5'- gCgGCAGcGCCGCCGCCG-GCcGCGa -3'
miRNA:   3'- gGgCGUUcCGGUGGCGGCuUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 10944 0.69 0.51399
Target:  5'- uCUCGCGGGGcCCGCCcCCaGACGcGUGGg -3'
miRNA:   3'- -GGGCGUUCC-GGUGGcGGcUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 11904 0.75 0.241721
Target:  5'- gCCCGCcgcGGGCCcgGCCcgGCCGGcggcuGCGGCGGc -3'
miRNA:   3'- -GGGCGu--UCCGG--UGG--CGGCU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 12028 0.67 0.67745
Target:  5'- gCCCGCGAcgcgcucGaGCC-CCaGCCGGAgcacguacCGGCGGu -3'
miRNA:   3'- -GGGCGUU-------C-CGGuGG-CGGCUU--------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 12123 0.68 0.618808
Target:  5'- -gCGCcAGGauggcgcCCGCCGCC--GCGGCGGc -3'
miRNA:   3'- ggGCGuUCC-------GGUGGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 12169 0.71 0.441844
Target:  5'- cCCCGCAcAGGCCagcGCCGCCGccaccauGCaGCGc -3'
miRNA:   3'- -GGGCGU-UCCGG---UGGCGGCu------UGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 12207 0.67 0.668692
Target:  5'- gCCGCcGGuGCCGCCGCCGcuGCuGCc- -3'
miRNA:   3'- gGGCGuUC-CGGUGGCGGCu-UGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 12341 0.82 0.093323
Target:  5'- gCCgGCGcGGCCGCCGCC--GCGGCGGc -3'
miRNA:   3'- -GGgCGUuCCGGUGGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 12518 0.77 0.177356
Target:  5'- aCCgCGCGGGGCCccgcgccGCCGCCGAauuuauacGCGGgGGc -3'
miRNA:   3'- -GG-GCGUUCCGG-------UGGCGGCU--------UGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 12754 0.66 0.726389
Target:  5'- gCCCgGCGAGGUCGuaGgCGG-CGGUGGc -3'
miRNA:   3'- -GGG-CGUUCCGGUggCgGCUuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13065 0.78 0.169395
Target:  5'- cCCUGCcGGGCgCGuCCGCCGGcccgucggcggGCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCG-GU-GGCGGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13338 0.66 0.688116
Target:  5'- aCUCGCGcGGCCAgCggucggcggagGCUGGGCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGUgG-----------CGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 13668 0.69 0.56144
Target:  5'- gCCGCGGGGggGgCGCgGGGCGcGCGGg -3'
miRNA:   3'- gGGCGUUCCggUgGCGgCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 13826 0.67 0.62664
Target:  5'- aCCCGCAgcgucaGGGUCGacugcgucuccucgUCGCCGGcgucgcCGGCGGc -3'
miRNA:   3'- -GGGCGU------UCCGGU--------------GGCGGCUu-----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13940 0.66 0.745111
Target:  5'- gUCGCGuugcGGCCcaGCCGCgCGGaaACGcGCGGu -3'
miRNA:   3'- gGGCGUu---CCGG--UGGCG-GCU--UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 14096 0.68 0.613915
Target:  5'- aCUCGCGgucgucgaggcagacGGGCguCgGCuCGGGCGGUGGg -3'
miRNA:   3'- -GGGCGU---------------UCCGguGgCG-GCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 14145 0.7 0.486313
Target:  5'- gCUCGCGAGGacgcuCCAgCCG-CGAACGGCGc -3'
miRNA:   3'- -GGGCGUUCC-----GGU-GGCgGCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 14354 0.66 0.697768
Target:  5'- gCgGCAGcaGCCGCgGCCGGgGCGGCGcGg -3'
miRNA:   3'- gGgCGUUc-CGGUGgCGGCU-UGCCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.