miRNA display CGI


Results 81 - 100 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 14449 0.66 0.735791
Target:  5'- gCUCGCGGGGCgCGCgGCgGAGCucGCGc -3'
miRNA:   3'- -GGGCGUUCCG-GUGgCGgCUUGc-CGCc -5'
23844 3' -60.9 NC_005261.1 + 15132 0.68 0.600235
Target:  5'- gUCGCGAcuccuucGCCcCCGCCGuccGCGGUGGg -3'
miRNA:   3'- gGGCGUUc------CGGuGGCGGCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 15188 0.69 0.56144
Target:  5'- gCCCGCGGGaaaCGCCGCCau-CGcGCGGu -3'
miRNA:   3'- -GGGCGUUCcg-GUGGCGGcuuGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 15246 0.72 0.383669
Target:  5'- cCCCGCucgcaguGGGCCGCgauCGCCc--CGGCGGc -3'
miRNA:   3'- -GGGCGu------UCCGGUG---GCGGcuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 15477 0.67 0.678421
Target:  5'- aCCGCGGcGGaCACgCGCCGcucgcuGCGGgCGGg -3'
miRNA:   3'- gGGCGUU-CCgGUG-GCGGCu-----UGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 15767 0.7 0.503764
Target:  5'- gCCGCGauacacaAGGCCGCUGgCGGGCGccgcccgcGCGGc -3'
miRNA:   3'- gGGCGU-------UCCGGUGGCgGCUUGC--------CGCC- -5'
23844 3' -60.9 NC_005261.1 + 15915 0.67 0.682304
Target:  5'- cCCCGCGcagccgGGGCCgggGCCggggcccgggcaggaGCCGGGggcgagUGGCGGg -3'
miRNA:   3'- -GGGCGU------UCCGG---UGG---------------CGGCUU------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 16054 0.67 0.678421
Target:  5'- --gGCAgcGGGCC-CgCGCCGAGcCGGCGc -3'
miRNA:   3'- gggCGU--UCCGGuG-GCGGCUU-GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 16135 0.67 0.629579
Target:  5'- gCCGCGAuGCCgACCccgauGCCGAcCGGCaGGg -3'
miRNA:   3'- gGGCGUUcCGG-UGG-----CGGCUuGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 16251 0.71 0.416292
Target:  5'- gUCCGCGccgGGGCCGCCgggGCCGGGCuucGGCu- -3'
miRNA:   3'- -GGGCGU---UCCGGUGG---CGGCUUG---CCGcc -5'
23844 3' -60.9 NC_005261.1 + 16287 0.8 0.123048
Target:  5'- gCCCGgGGGGgCGCCGUCGGgcccaGCGGCGGc -3'
miRNA:   3'- -GGGCgUUCCgGUGGCGGCU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 16370 0.67 0.647203
Target:  5'- cCCCGCcgccuucuccguGGGCCucGCCgucgucgucGCCGGGCGGUGcGg -3'
miRNA:   3'- -GGGCGu-----------UCCGG--UGG---------CGGCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 16797 0.71 0.441844
Target:  5'- gCCCGCcAGGaaGCCGUCccaGAACGGgGGc -3'
miRNA:   3'- -GGGCGuUCCggUGGCGG---CUUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 17092 0.71 0.445317
Target:  5'- gCCCGguGGuguGCCAgCGCuCGAuguaguuguaucgcgGCGGCGGg -3'
miRNA:   3'- -GGGCguUC---CGGUgGCG-GCU---------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 17166 0.7 0.486313
Target:  5'- aCCCGCGgcgcgggcguGGGCagccCUGCCGcGGCGGCGa -3'
miRNA:   3'- -GGGCGU----------UCCGgu--GGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 17292 0.67 0.64916
Target:  5'- gCCCGaCGAGGCUauauACCcgGCCGGggucGCGGCc- -3'
miRNA:   3'- -GGGC-GUUCCGG----UGG--CGGCU----UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 17552 0.67 0.639372
Target:  5'- -gCGCGGGcCCGCCGUUcGGCGGUGGc -3'
miRNA:   3'- ggGCGUUCcGGUGGCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 17645 0.76 0.210103
Target:  5'- aUCGCGAGGCCgaugaggaugGCgCGCCGcgUGGCGGg -3'
miRNA:   3'- gGGCGUUCCGG----------UG-GCGGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 17846 0.75 0.253109
Target:  5'- uUCCGCAGGGCCucguaagaGCgGCCGGcCGGCaGGc -3'
miRNA:   3'- -GGGCGUUCCGG--------UGgCGGCUuGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 18138 0.69 0.532795
Target:  5'- gCCGC-AGGCCcagUCGCCG-AUGGCGu -3'
miRNA:   3'- gGGCGuUCCGGu--GGCGGCuUGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.