miRNA display CGI


Results 101 - 120 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 18200 0.66 0.688116
Target:  5'- aCCC-CAGGGCCG-CGCCGAuccccCGGUc- -3'
miRNA:   3'- -GGGcGUUCCGGUgGCGGCUu----GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 18787 0.71 0.42471
Target:  5'- gCgGCGAGGgUGCCgGCuUGAGCGGCGGc -3'
miRNA:   3'- gGgCGUUCCgGUGG-CG-GCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 18931 0.76 0.230762
Target:  5'- aCCC-CAAGGCCG-CGCUGAA-GGCGGg -3'
miRNA:   3'- -GGGcGUUCCGGUgGCGGCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 19526 0.69 0.52336
Target:  5'- cCCCGCAGcacGGCCcgcgucACCGCCagcgccgugggGAGCGccaGCGGg -3'
miRNA:   3'- -GGGCGUU---CCGG------UGGCGG-----------CUUGC---CGCC- -5'
23844 3' -60.9 NC_005261.1 + 19757 0.66 0.734854
Target:  5'- uCCCGCGcgggcgcGGGCC-CCGUcgccuCGAACacGCGGc -3'
miRNA:   3'- -GGGCGU-------UCCGGuGGCG-----GCUUGc-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 20025 0.67 0.639372
Target:  5'- gUCCGCGgucagcGGGCCGgUuCCGucCGGCGGu -3'
miRNA:   3'- -GGGCGU------UCCGGUgGcGGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 20097 0.68 0.600235
Target:  5'- aUCCGCgGGGGCUuCCGCgGcaaGGCGcGCGGg -3'
miRNA:   3'- -GGGCG-UUCCGGuGGCGgC---UUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 20224 0.68 0.571086
Target:  5'- gCCCGCugccuGGCCAgccgcuCCGCCGcgcgcuccAugGGCGc -3'
miRNA:   3'- -GGGCGuu---CCGGU------GGCGGC--------UugCCGCc -5'
23844 3' -60.9 NC_005261.1 + 20621 0.7 0.488137
Target:  5'- gCCCGCAuccgggacugccGGCCcgguucgccgcccgcACCGCCGGugGCGGCa- -3'
miRNA:   3'- -GGGCGUu-----------CCGG---------------UGGCGGCU--UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 20871 0.66 0.745111
Target:  5'- gCCGCGGgccGGCCAUCGCC-AGCucGUGGc -3'
miRNA:   3'- gGGCGUU---CCGGUGGCGGcUUGc-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 21202 0.76 0.236188
Target:  5'- gCCGCGGacgcuGGCC-CCgGCCGcGACGGCGGg -3'
miRNA:   3'- gGGCGUU-----CCGGuGG-CGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 21783 0.79 0.145963
Target:  5'- gCCGCGgcgcGGGCCgccgcaGCCGCCGGccgggccgggcccGCGGCGGg -3'
miRNA:   3'- gGGCGU----UCCGG------UGGCGGCU-------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 22071 0.68 0.590489
Target:  5'- uCCgGCGGGGCUcgagggggcGCCGCgUGGG-GGCGGg -3'
miRNA:   3'- -GGgCGUUCCGG---------UGGCG-GCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 22724 0.67 0.629579
Target:  5'- gCCG-GAGGaCCAgCGCCagucgggcgcgGGGCGGCGGc -3'
miRNA:   3'- gGGCgUUCC-GGUgGCGG-----------CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 22784 0.76 0.210103
Target:  5'- cCCCGCGAGaaggggguuGUCGCgGCCG-GCGGCGGc -3'
miRNA:   3'- -GGGCGUUC---------CGGUGgCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 22820 0.66 0.697768
Target:  5'- gCUGCc--GCCGCCGCCGu-UGGCGc -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCuuGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 22965 0.66 0.735791
Target:  5'- -aCGaCGAGGCCGagGaCCGGgaggagGCGGCGGa -3'
miRNA:   3'- ggGC-GUUCCGGUggC-GGCU------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23021 0.71 0.416292
Target:  5'- gCCCGCGAacGCCuuUGCCGGgaggggACGGCGGc -3'
miRNA:   3'- -GGGCGUUc-CGGugGCGGCU------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23201 0.71 0.441844
Target:  5'- gCCGCGGGGC--CCGCa--GCGGCGGc -3'
miRNA:   3'- gGGCGUUCCGguGGCGgcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23308 0.73 0.352789
Target:  5'- aCCCGUAuGGCCgagcagaaagaaGCCGaCGAGCGcGCGGc -3'
miRNA:   3'- -GGGCGUuCCGG------------UGGCgGCUUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.