miRNA display CGI


Results 121 - 140 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 23354 0.66 0.735791
Target:  5'- gCgCGCGugucGGCCGugacaaaCGCCGAGcCGGUGGc -3'
miRNA:   3'- -GgGCGUu---CCGGUg------GCGGCUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23571 0.66 0.697768
Target:  5'- --gGCAGGGCUgGCCGUgGcucauGGCGGCGGu -3'
miRNA:   3'- gggCGUUCCGG-UGGCGgC-----UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23612 0.75 0.24736
Target:  5'- gUCGCc--GCCGCUGCCGGggcGCGGCGGg -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCU---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23699 0.7 0.477244
Target:  5'- -aCGCGAGGcCCGCCcgGUCGggUGGCa- -3'
miRNA:   3'- ggGCGUUCC-GGUGG--CGGCuuGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 23907 0.7 0.501914
Target:  5'- gCUCGCuGGGCUggGCCaGCUGGggugggcucaccucGCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGG--UGG-CGGCU--------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 24101 0.7 0.50469
Target:  5'- cCCCGCcuGcCCACC-CCGGGCccgaGGCGGg -3'
miRNA:   3'- -GGGCGuuCcGGUGGcGGCUUG----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 24179 0.66 0.734854
Target:  5'- uUCCGgGGGGUCGUCGgCGAGgcuccaggaucguCGGCGGg -3'
miRNA:   3'- -GGGCgUUCCGGUGGCgGCUU-------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 24381 0.72 0.360341
Target:  5'- uCCCGguGGGCU--CGUCG-GCGGCGGg -3'
miRNA:   3'- -GGGCguUCCGGugGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 24528 0.67 0.658936
Target:  5'- --aGCAAGGuguccCCGCCcacguaccugGCCGGGCGGCGc -3'
miRNA:   3'- gggCGUUCC-----GGUGG----------CGGCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 24920 0.69 0.52336
Target:  5'- gCCCuCGGcGGCUgcaGCCGCCGAGgGGCaGGc -3'
miRNA:   3'- -GGGcGUU-CCGG---UGGCGGCUUgCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 26650 0.73 0.316723
Target:  5'- uCCUGCcccuGGGCCACaCGcCCGGAC-GCGGa -3'
miRNA:   3'- -GGGCGu---UCCGGUG-GC-GGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 27455 0.69 0.54229
Target:  5'- gCgGC-GGGCCGCC-CCGcGgGGCGGg -3'
miRNA:   3'- gGgCGuUCCGGUGGcGGCuUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 27708 0.66 0.726389
Target:  5'- gCUCGCcGGaGCCcucGCCGCgGGAgGaGCGGa -3'
miRNA:   3'- -GGGCGuUC-CGG---UGGCGgCUUgC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 27995 0.68 0.5798
Target:  5'- uCCCGCc-GGCCucuCCG-CGAAagggggcCGGCGGg -3'
miRNA:   3'- -GGGCGuuCCGGu--GGCgGCUU-------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28176 0.71 0.433227
Target:  5'- cCCCGUcucGCUGCgCGCCGAAgcCGGCGGc -3'
miRNA:   3'- -GGGCGuucCGGUG-GCGGCUU--GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28273 0.66 0.688116
Target:  5'- -gCGCuguuGCCGCCGCCGcGGCcGCGGu -3'
miRNA:   3'- ggGCGuuc-CGGUGGCGGC-UUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28441 0.67 0.64916
Target:  5'- aCCGCGGccGGCCAUggCGUCuccCGGCGGg -3'
miRNA:   3'- gGGCGUU--CCGGUG--GCGGcuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28593 0.8 0.123048
Target:  5'- gCCgGC-GGGCCGCCcgcGCCGAGCuGGCGGa -3'
miRNA:   3'- -GGgCGuUCCGGUGG---CGGCUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28630 0.66 0.694877
Target:  5'- -gCGCAuGGUgGCCGCgGGGgagagugacgaggcCGGCGGg -3'
miRNA:   3'- ggGCGUuCCGgUGGCGgCUU--------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28802 0.75 0.253109
Target:  5'- gCCGCGgcGGaggcaGCCGCCGCCGAAgccgaGGCGGc -3'
miRNA:   3'- gGGCGU--UC-----CGGUGGCGGCUUg----CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.