miRNA display CGI


Results 141 - 160 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 28853 0.72 0.368006
Target:  5'- gCCGUcguGGCCGCCGCCcuuGAggcuGCGGCGcGg -3'
miRNA:   3'- gGGCGuu-CCGGUGGCGG---CU----UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 29047 0.7 0.486313
Target:  5'- -aCG-GGGGCCGCCGCCGccGCGGCc- -3'
miRNA:   3'- ggGCgUUCCGGUGGCGGCu-UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 29134 0.7 0.486313
Target:  5'- gCCGgGGGGCgCcCCGCCGGACccgcccGCGGa -3'
miRNA:   3'- gGGCgUUCCG-GuGGCGGCUUGc-----CGCC- -5'
23844 3' -60.9 NC_005261.1 + 29250 0.75 0.24736
Target:  5'- gCCGCGcgacGGGCCGCCGCCGcugGAgGGCc- -3'
miRNA:   3'- gGGCGU----UCCGGUGGCGGC---UUgCCGcc -5'
23844 3' -60.9 NC_005261.1 + 29310 0.71 0.416292
Target:  5'- gCCCgGCAGcGcGCCGCCGCCGccCGGCc- -3'
miRNA:   3'- -GGG-CGUU-C-CGGUGGCGGCuuGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 29395 0.84 0.07049
Target:  5'- aUCCGCGAGGCgGCCGCgCGcuacGCGGCGGc -3'
miRNA:   3'- -GGGCGUUCCGgUGGCG-GCu---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29425 0.72 0.375
Target:  5'- gCCGCGGGGcCCGCgGCCGuguucgugccggaGAUGGgGGa -3'
miRNA:   3'- gGGCGUUCC-GGUGgCGGC-------------UUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 29558 0.71 0.441844
Target:  5'- aCCUGCAGcuGGCgCGCCuGCUGcAGCGGCGc -3'
miRNA:   3'- -GGGCGUU--CCG-GUGG-CGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 29623 0.66 0.726389
Target:  5'- aCCGgGAGcgugacggcGCCGCUGCCGc-CGGuCGGg -3'
miRNA:   3'- gGGCgUUC---------CGGUGGCGGCuuGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 29707 0.68 0.619787
Target:  5'- gCCUGCGuGGCCaugaGCCGCCGcuacGACuGCGa -3'
miRNA:   3'- -GGGCGUuCCGG----UGGCGGC----UUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 29795 0.77 0.200384
Target:  5'- aCCCG-GAGGCCGgCGCCGG-CGGCGcGg -3'
miRNA:   3'- -GGGCgUUCCGGUgGCGGCUuGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 29824 0.66 0.735791
Target:  5'- gCCCGC---GCCGCgcuCGCCGAGCuGCGc -3'
miRNA:   3'- -GGGCGuucCGGUG---GCGGCUUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 29901 0.69 0.51399
Target:  5'- gCCCGCGGcagcgcgcGaGCgGCUGCgCGAGCuGGCGGa -3'
miRNA:   3'- -GGGCGUU--------C-CGgUGGCG-GCUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29956 0.67 0.628599
Target:  5'- gCCGCGAGGCgcuagaggcggcgCggugcGCCGCCGGcgcguccggcaGCGGCGc -3'
miRNA:   3'- gGGCGUUCCG-------------G-----UGGCGGCU-----------UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 30033 0.68 0.571086
Target:  5'- gCUGCAgcGGGCCGCggccUGCCGGccGCGGCc- -3'
miRNA:   3'- gGGCGU--UCCGGUG----GCGGCU--UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 30173 0.76 0.230226
Target:  5'- gCCCGCcgcgcugcgcgccGAGGCgGCCGCCGcGCuggaGGCGGc -3'
miRNA:   3'- -GGGCG-------------UUCCGgUGGCGGCuUG----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 30234 0.66 0.739529
Target:  5'- aCCGU--GGCC-CCGCUGGcgcgguacucgacgcGCGGCGcGg -3'
miRNA:   3'- gGGCGuuCCGGuGGCGGCU---------------UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 30348 0.71 0.423863
Target:  5'- gCCGCGcucgcggcccugaAGGCCgGCgCGCCGGGCGccGCGGc -3'
miRNA:   3'- gGGCGU-------------UCCGG-UG-GCGGCUUGC--CGCC- -5'
23844 3' -60.9 NC_005261.1 + 30547 0.7 0.486313
Target:  5'- -aCGaggaaGAGGCCGCCGCCGccggggccuCGGaCGGg -3'
miRNA:   3'- ggGCg----UUCCGGUGGCGGCuu-------GCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 30708 0.67 0.668692
Target:  5'- gCCCGCGGGaGCCccGgCGCCGGGCcGCc- -3'
miRNA:   3'- -GGGCGUUC-CGG--UgGCGGCUUGcCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.