miRNA display CGI


Results 41 - 60 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 131400 0.7 0.486313
Target:  5'- aCCGCcaccGAGccccccGCCGCUGCCGGcaGCGGCGc -3'
miRNA:   3'- gGGCG----UUC------CGGUGGCGGCU--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 131193 0.72 0.399768
Target:  5'- gCCCGCGGcgcGGUCGCCGCCG-GCGcGCc- -3'
miRNA:   3'- -GGGCGUU---CCGGUGGCGGCuUGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 130568 0.76 0.220226
Target:  5'- gCCCGCcGGGCggaagCGCCGCCGcGCGGCc- -3'
miRNA:   3'- -GGGCGuUCCG-----GUGGCGGCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 130295 0.66 0.744183
Target:  5'- gCCCGCAcaGCCACCcaaccaGCCGcugcagcgccaugGACGGCc- -3'
miRNA:   3'- -GGGCGUucCGGUGG------CGGC-------------UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 130235 0.66 0.707369
Target:  5'- gCCCGCucAGG-CGCCGCgCcAGCGGCu- -3'
miRNA:   3'- -GGGCGu-UCCgGUGGCG-GcUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 130180 0.66 0.735791
Target:  5'- gCCggcaGCAGGGagcugacggccaCCACCGCCuccuGCaGGCGGa -3'
miRNA:   3'- -GGg---CGUUCC------------GGUGGCGGcu--UG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 130133 0.66 0.726389
Target:  5'- gCCGCGc-GCCGuCCGCCGAGC-GCa- -3'
miRNA:   3'- gGGCGUucCGGU-GGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 129698 0.72 0.398953
Target:  5'- gCCGgggcCGGGGCCGgaggcaggcCCGCCGGcugcagcggcaggGCGGCGGg -3'
miRNA:   3'- gGGC----GUUCCGGU---------GGCGGCU-------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 129535 0.68 0.58077
Target:  5'- -gCGCGcGGGCUA-CGCCGcaaggugcaaGACGGCGGg -3'
miRNA:   3'- ggGCGU-UCCGGUgGCGGC----------UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 129312 0.66 0.688116
Target:  5'- cCCCGCGccugcgcuGGcGCCGCguCGCCGAccucGCcGCGGu -3'
miRNA:   3'- -GGGCGU--------UC-CGGUG--GCGGCU----UGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 129284 0.67 0.668692
Target:  5'- cCCCGCGccGCC-CCGCCcgccccCGGCGc -3'
miRNA:   3'- -GGGCGUucCGGuGGCGGcuu---GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 128861 0.72 0.375783
Target:  5'- cCCCGCcucGUCGCUGCCGAcgacgaGGCGGg -3'
miRNA:   3'- -GGGCGuucCGGUGGCGGCUug----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 128331 0.67 0.678421
Target:  5'- gCCUGCGGGGgCuCCGa-GAGCGGCa- -3'
miRNA:   3'- -GGGCGUUCCgGuGGCggCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 128052 0.67 0.678421
Target:  5'- aCCUGUGgaaccGGGCCAUgG-CGGGCGGgCGGg -3'
miRNA:   3'- -GGGCGU-----UCCGGUGgCgGCUUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 127795 0.77 0.200384
Target:  5'- gCgGC-GGGCCGgCGCCGcGGCGGCGGg -3'
miRNA:   3'- gGgCGuUCCGGUgGCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 127680 0.72 0.383669
Target:  5'- aCgGCGGcGGCCGCUGCCc--CGGCGGc -3'
miRNA:   3'- gGgCGUU-CCGGUGGCGGcuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 127636 0.66 0.707369
Target:  5'- -aCGCGAcGGCgGCggCGCCGGgggGCGcGCGGg -3'
miRNA:   3'- ggGCGUU-CCGgUG--GCGGCU---UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 127576 0.66 0.726389
Target:  5'- gCCCGCAccAGGgCGCC-CUGGGCGucuuCGGg -3'
miRNA:   3'- -GGGCGU--UCCgGUGGcGGCUUGCc---GCC- -5'
23844 3' -60.9 NC_005261.1 + 127491 0.66 0.707369
Target:  5'- -aCGCuggcGGCUGCCuGCCGGGCguacucGGCGGc -3'
miRNA:   3'- ggGCGuu--CCGGUGG-CGGCUUG------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 127362 0.71 0.450556
Target:  5'- gCCCGCGuGGCUAggaUGUCGuugGCGGCGGc -3'
miRNA:   3'- -GGGCGUuCCGGUg--GCGGCu--UGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.