miRNA display CGI


Results 61 - 80 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 127303 0.8 0.123048
Target:  5'- cCCCGCcggcuggcgguGGGGCCcuGCCGCCcgcgggggccgGAGCGGCGGg -3'
miRNA:   3'- -GGGCG-----------UUCCGG--UGGCGG-----------CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 127082 0.69 0.532795
Target:  5'- gCCGCcgcGCCGCCGCaauGACGGCuGGg -3'
miRNA:   3'- gGGCGuucCGGUGGCGgc-UUGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 126995 0.79 0.149958
Target:  5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3'
miRNA:   3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126933 0.66 0.735791
Target:  5'- uCCagcaGCGcGGCCAggggCGCCGGGC-GCGGg -3'
miRNA:   3'- -GGg---CGUuCCGGUg---GCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126675 0.72 0.375783
Target:  5'- cUCCGgGAGGCCcuCCuCCGAGgcCGGCGGu -3'
miRNA:   3'- -GGGCgUUCCGGu-GGcGGCUU--GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126538 0.66 0.726389
Target:  5'- gCCGCGccucGGCCACgCGCCGccguCGcGCGc -3'
miRNA:   3'- gGGCGUu---CCGGUG-GCGGCuu--GC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 126488 0.71 0.433227
Target:  5'- aCCGCGccGCCACCagcuGCCGca-GGCGGu -3'
miRNA:   3'- gGGCGUucCGGUGG----CGGCuugCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126055 0.76 0.215114
Target:  5'- uCCCGCuccGGcGCCAgccgcCCGCCGGccuCGGCGGg -3'
miRNA:   3'- -GGGCGu--UC-CGGU-----GGCGGCUu--GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 125812 0.7 0.486313
Target:  5'- gCCG--GGGCCGCCG-CGAGCGGggcCGGa -3'
miRNA:   3'- gGGCguUCCGGUGGCgGCUUGCC---GCC- -5'
23844 3' -60.9 NC_005261.1 + 125767 0.68 0.610003
Target:  5'- gCCGCGggcucggcuaAGGCCaagGCCGCugCGAACGG-GGc -3'
miRNA:   3'- gGGCGU----------UCCGG---UGGCG--GCUUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 125706 0.75 0.264935
Target:  5'- gCCCgGCGAcGGCCGCCGCgGGcuCGGCuGGg -3'
miRNA:   3'- -GGG-CGUU-CCGGUGGCGgCUu-GCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 125281 0.71 0.450556
Target:  5'- gCCGCuggaagucAGGCCGCgggCGCCGGACccGCGGg -3'
miRNA:   3'- gGGCGu-------UCCGGUG---GCGGCUUGc-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 124925 0.67 0.658936
Target:  5'- gCCGCgGAGGCU-CCGCCGcGCGcGCu- -3'
miRNA:   3'- gGGCG-UUCCGGuGGCGGCuUGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 124755 0.73 0.323709
Target:  5'- gCCGCAGcGGCCGCCuccagGCUGAggaGCGGgGGc -3'
miRNA:   3'- gGGCGUU-CCGGUGG-----CGGCU---UGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 124246 0.68 0.571086
Target:  5'- gCCGC-GGGCaGgCGCCGcGCGGCGc -3'
miRNA:   3'- gGGCGuUCCGgUgGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 123894 0.74 0.303096
Target:  5'- uUCGCGgaAGGCCGCCGCUGugggguGCGGCc- -3'
miRNA:   3'- gGGCGU--UCCGGUGGCGGCu-----UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 123212 0.69 0.51399
Target:  5'- gCCGCGuaagcgcGGCCuGCCGCCuAGCGGCc- -3'
miRNA:   3'- gGGCGUu------CCGG-UGGCGGcUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 123059 0.73 0.33296
Target:  5'- gCCCGCcgcucgauGAGGCCccgagagGCgGCCGGccacgccauuucgccGCGGCGGg -3'
miRNA:   3'- -GGGCG--------UUCCGG-------UGgCGGCU---------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 122993 0.74 0.303096
Target:  5'- uCCUGCAGGGCCACUacgGCCGcGGCcGUGGc -3'
miRNA:   3'- -GGGCGUUCCGGUGG---CGGC-UUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 122711 0.66 0.707369
Target:  5'- gCCGCc-GGCCgcGCCGUCGAuguucacguCGGCGc -3'
miRNA:   3'- gGGCGuuCCGG--UGGCGGCUu--------GCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.