miRNA display CGI


Results 81 - 100 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 122607 0.67 0.629579
Target:  5'- gCCGCGuugucGuGCCugUGCuUGAACGGCGa -3'
miRNA:   3'- gGGCGUu----C-CGGugGCG-GCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 122567 0.69 0.56144
Target:  5'- -aCGCAAGGCgCugcgcagcuCCGCCGcAGCGGCc- -3'
miRNA:   3'- ggGCGUUCCG-Gu--------GGCGGC-UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 122350 0.68 0.619787
Target:  5'- gCUCGCcuGGCgGCCGCgGcuCGcGCGGc -3'
miRNA:   3'- -GGGCGuuCCGgUGGCGgCuuGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 122299 0.68 0.590489
Target:  5'- cCCCGCugccgcAGGCgACgC-CCGGGCcGGCGGu -3'
miRNA:   3'- -GGGCGu-----UCCGgUG-GcGGCUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121861 0.7 0.50469
Target:  5'- gCCCGC--GGCUcCCGCCGAGCcGCa- -3'
miRNA:   3'- -GGGCGuuCCGGuGGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 121824 0.71 0.42471
Target:  5'- cUCUGC-GGGCCGCCGC--GGCGGCGc -3'
miRNA:   3'- -GGGCGuUCCGGUGGCGgcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 121774 0.68 0.600235
Target:  5'- gCgGUggGGUgGCCGCgGc-CGGCGGg -3'
miRNA:   3'- gGgCGuuCCGgUGGCGgCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121701 0.68 0.610003
Target:  5'- -gCGCAuggAGGCguagaCGCCG-ACGGCGGg -3'
miRNA:   3'- ggGCGU---UCCGgug--GCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121627 0.76 0.215114
Target:  5'- uCCCGCcgcucggcGGCCGCCGCCG-GCGagcGCGGg -3'
miRNA:   3'- -GGGCGuu------CCGGUGGCGGCuUGC---CGCC- -5'
23844 3' -60.9 NC_005261.1 + 121545 0.69 0.55184
Target:  5'- gCUGUcGGaGCCGCCGUccucggCGAAgGGCGGg -3'
miRNA:   3'- gGGCGuUC-CGGUGGCG------GCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121476 0.75 0.241721
Target:  5'- cUCgGCGuaccGGCUGCCGCCacgGGGCGGCGGg -3'
miRNA:   3'- -GGgCGUu---CCGGUGGCGG---CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121405 0.78 0.169395
Target:  5'- gCCCgaguGCGAcGGCUGCCGCCGccgcuacggGGCGGCGGg -3'
miRNA:   3'- -GGG----CGUU-CCGGUGGCGGC---------UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121376 0.71 0.416292
Target:  5'- aCUGCAGGcGCC-CCGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUUC-CGGuGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121267 0.68 0.600235
Target:  5'- gCCGCAgacgGGGCgGCCGCCc--CGGCc- -3'
miRNA:   3'- gGGCGU----UCCGgUGGCGGcuuGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 120966 0.72 0.375783
Target:  5'- cCCCGCGGGGCgCguGCCGCCGca-GGCc- -3'
miRNA:   3'- -GGGCGUUCCG-G--UGGCGGCuugCCGcc -5'
23844 3' -60.9 NC_005261.1 + 120928 0.67 0.639372
Target:  5'- aUCCGCGAGcGCCgGgCGCgGGAaGGUGGa -3'
miRNA:   3'- -GGGCGUUC-CGG-UgGCGgCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 120618 0.68 0.590489
Target:  5'- gCCGUggGGCUcCUGCUGGugGCGGCc- -3'
miRNA:   3'- gGGCGuuCCGGuGGCGGCU--UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 120388 0.67 0.628599
Target:  5'- cCUCGCGcaccgagcagagcGGcGUCugCGCUGAGCGGCcuGGg -3'
miRNA:   3'- -GGGCGU-------------UC-CGGugGCGGCUUGCCG--CC- -5'
23844 3' -60.9 NC_005261.1 + 120072 0.66 0.688116
Target:  5'- uUCCGCAAcGGCUACC-CCGuggaggcuCGGCa- -3'
miRNA:   3'- -GGGCGUU-CCGGUGGcGGCuu------GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 119534 0.71 0.433227
Target:  5'- cCCCGCGgccgagcaAGGCC-CCGCCGcGgGGCc- -3'
miRNA:   3'- -GGGCGU--------UCCGGuGGCGGCuUgCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.