miRNA display CGI


Results 101 - 120 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 119214 0.69 0.51399
Target:  5'- gCCCGCcauGGCC-CUGCCGgGGCGaGCGu -3'
miRNA:   3'- -GGGCGuu-CCGGuGGCGGC-UUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 119006 0.73 0.338021
Target:  5'- gCCUGCuGGGCCcgcGCCGaCGAAUGaGCGGa -3'
miRNA:   3'- -GGGCGuUCCGG---UGGCgGCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 118926 0.7 0.459362
Target:  5'- gCCGC-GGGCgCGgCGCCGcGCGGCuGGc -3'
miRNA:   3'- gGGCGuUCCG-GUgGCGGCuUGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 118867 0.73 0.316723
Target:  5'- gCCCGCGGcccuggccucGGCCACCGCgGGcgcGCuGGUGGc -3'
miRNA:   3'- -GGGCGUU----------CCGGUGGCGgCU---UG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 118817 0.66 0.707369
Target:  5'- gUCUGCGcccuGGGCgcggCACUGCCGcucuGCGGCGcGg -3'
miRNA:   3'- -GGGCGU----UCCG----GUGGCGGCu---UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 118654 0.7 0.459362
Target:  5'- cCCCG---GGCCGCgCGCUcggggcugaGGGCGGCGGg -3'
miRNA:   3'- -GGGCguuCCGGUG-GCGG---------CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 118599 0.7 0.503764
Target:  5'- gCCGCGGagcucgcgcugucGGCCguugcccugGCCGCCGcGGCGGCGc -3'
miRNA:   3'- gGGCGUU-------------CCGG---------UGGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 118554 0.69 0.560478
Target:  5'- gCgCGCGAGGaCGCCGUgcccgcgCGcGCGGCGGc -3'
miRNA:   3'- -GgGCGUUCCgGUGGCG-------GCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 118404 0.68 0.610003
Target:  5'- gCCGCGGGcGCCGCaGCCGcGCuGGCu- -3'
miRNA:   3'- gGGCGUUC-CGGUGgCGGCuUG-CCGcc -5'
23844 3' -60.9 NC_005261.1 + 118233 0.69 0.56144
Target:  5'- gCCGC--GGCCGCggccuaCGCCGucuGCGGCGu -3'
miRNA:   3'- gGGCGuuCCGGUG------GCGGCu--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 118136 0.7 0.456711
Target:  5'- gCCGCucGGCCGgCucgcgcagacgcugGCCGucGCGGCGGg -3'
miRNA:   3'- gGGCGuuCCGGUgG--------------CGGCu-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 118052 0.72 0.360341
Target:  5'- gCCCGCGcuGGCgGCCGCgGcAGCGGCc- -3'
miRNA:   3'- -GGGCGUu-CCGgUGGCGgC-UUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 117971 0.68 0.58077
Target:  5'- gCUCGCugccauGGGCgcgcaCACCgGCCuGACGGCGGc -3'
miRNA:   3'- -GGGCGu-----UCCG-----GUGG-CGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 117725 0.69 0.516794
Target:  5'- gCCCGCAAGcggccgcgcgcuggcGCCGCCGCCcccaacgcgacucGggUccggaucggGGCGGg -3'
miRNA:   3'- -GGGCGUUC---------------CGGUGGCGG-------------CuuG---------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 117689 0.72 0.399768
Target:  5'- gCCCGCGgcgAGGCCgGCCcugagGCCGG-CGcGCGGg -3'
miRNA:   3'- -GGGCGU---UCCGG-UGG-----CGGCUuGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 117658 0.72 0.375783
Target:  5'- cCCCGCuAAGcGCC-CCGCCGcgccCGGcCGGg -3'
miRNA:   3'- -GGGCG-UUC-CGGuGGCGGCuu--GCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 117362 0.84 0.068527
Target:  5'- gCCCGCAAGGCCGCCcuccuggaggcgcGCUGcuuCGGCGGg -3'
miRNA:   3'- -GGGCGUUCCGGUGG-------------CGGCuu-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 116649 0.76 0.210103
Target:  5'- gCCCGCGcGcCCGCCGCCGAccugcuccGCGGCGc -3'
miRNA:   3'- -GGGCGUuCcGGUGGCGGCU--------UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 116617 0.68 0.619787
Target:  5'- cCUCGCAccGCCcgcCCGCCGAcgAgGGCGa -3'
miRNA:   3'- -GGGCGUucCGGu--GGCGGCU--UgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 116584 0.66 0.716912
Target:  5'- -aCGcCGAGGCCACCGCCaAGauGCu- -3'
miRNA:   3'- ggGC-GUUCCGGUGGCGGcUUgcCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.