miRNA display CGI


Results 121 - 140 of 737 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 116496 0.66 0.735791
Target:  5'- -gCGCGcGGUauaaagagCGCCGCCGcGGCGGCGc -3'
miRNA:   3'- ggGCGUuCCG--------GUGGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 116006 0.73 0.323709
Target:  5'- gCCCGaggcGGCCugaGCCGCCGA-CGGCGc -3'
miRNA:   3'- -GGGCguu-CCGG---UGGCGGCUuGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 115904 0.68 0.571086
Target:  5'- cCCCGCcgucgucAGcGCCgGCCGCCGcguccGCGcGCGGg -3'
miRNA:   3'- -GGGCGu------UC-CGG-UGGCGGCu----UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 115852 0.76 0.209608
Target:  5'- gCCCGCGcGGCCcCCGCCGAGgcgcgccCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGuGGCGGCUU-------GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 115609 0.67 0.658936
Target:  5'- cCCCaGCGAGGCCAgcaCGUC--GCGGCa- -3'
miRNA:   3'- -GGG-CGUUCCGGUg--GCGGcuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 115412 0.69 0.532795
Target:  5'- aCCGCGggcggcagccgGGGCCGCgGCCcGAgcucgcgcucGCGGcCGGa -3'
miRNA:   3'- gGGCGU-----------UCCGGUGgCGG-CU----------UGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 115015 0.67 0.681334
Target:  5'- cCCCGCgGAGGCCucgucccaauaguCUGCCagcacccuggcgaaGGGgGGCGGg -3'
miRNA:   3'- -GGGCG-UUCCGGu------------GGCGG--------------CUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 114556 0.7 0.46826
Target:  5'- cUCgGCGGggagcGGCCGCCGCCGGAUcGCGu -3'
miRNA:   3'- -GGgCGUU-----CCGGUGGCGGCUUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 114354 0.77 0.186539
Target:  5'- -gCGCGuGGCCGCgGCCGAGuCGGUGGc -3'
miRNA:   3'- ggGCGUuCCGGUGgCGGCUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 113827 0.73 0.345348
Target:  5'- uUCGCAAGGCCACCaaC-AACGGCGu -3'
miRNA:   3'- gGGCGUUCCGGUGGcgGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 113564 0.67 0.629579
Target:  5'- aCCGCGAgcaguggucGGUgGCCGCCGcGCugGGCGa -3'
miRNA:   3'- gGGCGUU---------CCGgUGGCGGCuUG--CCGCc -5'
23844 3' -60.9 NC_005261.1 + 113524 0.66 0.716912
Target:  5'- aCgCGCGAGGCCAgCCggcucgggGCCGuGCGcGCGc -3'
miRNA:   3'- -GgGCGUUCCGGU-GG--------CGGCuUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 112639 0.69 0.56144
Target:  5'- gCUGCAcGGCCcggccuucgcaGCCGaguaCGAGCGGCuGGa -3'
miRNA:   3'- gGGCGUuCCGG-----------UGGCg---GCUUGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 112244 0.66 0.704494
Target:  5'- gCCGUgGAGGCCAUcaccacggaggucgCGCgGAuccugcucaaccGCGGCGGg -3'
miRNA:   3'- gGGCG-UUCCGGUG--------------GCGgCU------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 112150 0.72 0.399768
Target:  5'- gCCCGCGAcGCCGaucaugcucuUCGCCGGccGCGcGCGGg -3'
miRNA:   3'- -GGGCGUUcCGGU----------GGCGGCU--UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 111465 0.66 0.697768
Target:  5'- gCCgGCGAGGCCAaaaGgCGGGCgGGUGa -3'
miRNA:   3'- -GGgCGUUCCGGUgg-CgGCUUG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 111305 0.67 0.64916
Target:  5'- gCCGCugccuccGCCGCCGCCGcGCGcuCGGu -3'
miRNA:   3'- gGGCGuuc----CGGUGGCGGCuUGCc-GCC- -5'
23844 3' -60.9 NC_005261.1 + 111243 0.7 0.46826
Target:  5'- cCCCGCGgccgggcccAGGCCACCuGCCgcugaGAGCGaGCa- -3'
miRNA:   3'- -GGGCGU---------UCCGGUGG-CGG-----CUUGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 111022 0.7 0.477244
Target:  5'- gCCGC-GGGUCACCuGCCGcAGCGaGCGc -3'
miRNA:   3'- gGGCGuUCCGGUGG-CGGC-UUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 110929 0.69 0.55184
Target:  5'- gCCGCGcuGGGCaccgAgCGCCGccCGGCGGc -3'
miRNA:   3'- gGGCGU--UCCGg---UgGCGGCuuGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.