miRNA display CGI


Results 141 - 160 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 110868 0.7 0.459362
Target:  5'- gCCGCGcGGCCuACCGCUGccccgucucGCGGCuGGg -3'
miRNA:   3'- gGGCGUuCCGG-UGGCGGCu--------UGCCG-CC- -5'
23844 3' -60.9 NC_005261.1 + 110765 0.71 0.411291
Target:  5'- gCUGCAccGCaCACCGCCGAgaacgugcuccggggGaCGGCGGg -3'
miRNA:   3'- gGGCGUucCG-GUGGCGGCU---------------U-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 110350 0.69 0.527126
Target:  5'- gCgCGCAccugauuuccaacucGGGCgACCGCCGcAUGGCGc -3'
miRNA:   3'- -GgGCGU---------------UCCGgUGGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 110294 0.72 0.391665
Target:  5'- cCUgGCGGGcGCCugcGCCGCCGAguACGGCa- -3'
miRNA:   3'- -GGgCGUUC-CGG---UGGCGGCU--UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 110154 0.73 0.330808
Target:  5'- aUCgGCAuGGCCGCCGCCaccgcgccccccGGGCGGCa- -3'
miRNA:   3'- -GGgCGUuCCGGUGGCGG------------CUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 110012 0.71 0.416292
Target:  5'- gCCCGCcGGcGCCGCCGUCcuuucgccUGGCGGg -3'
miRNA:   3'- -GGGCGuUC-CGGUGGCGGcuu-----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109800 0.75 0.264935
Target:  5'- gCUGCGAcGGCCGgCGCCGcuuccgccGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGGUgGCGGCu-------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109639 0.66 0.730159
Target:  5'- gCuuGC--GGCCGCCGCCccagacaccuaacccGAGC-GCGGg -3'
miRNA:   3'- -GggCGuuCCGGUGGCGG---------------CUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109533 0.67 0.64916
Target:  5'- gCCCGCcgcGGGCCcccucgccacaACCGCC--GCGGCc- -3'
miRNA:   3'- -GGGCGu--UCCGG-----------UGGCGGcuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 109352 0.67 0.64916
Target:  5'- gCCGCGucGCCguccaGCCGCuCGAGC-GCGGc -3'
miRNA:   3'- gGGCGUucCGG-----UGGCG-GCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109324 0.79 0.135891
Target:  5'- cUCCGCGAGcGCgGCCGCgGGGuCGGCGGc -3'
miRNA:   3'- -GGGCGUUC-CGgUGGCGgCUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109090 0.68 0.619787
Target:  5'- gCCGUu-GGCCAggucccggaCGCCGGccaugaggGCGGCGGu -3'
miRNA:   3'- gGGCGuuCCGGUg--------GCGGCU--------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109047 0.73 0.316723
Target:  5'- gCCGCGcGGCCGCCagguaGCCcAGCGGCGc -3'
miRNA:   3'- gGGCGUuCCGGUGG-----CGGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 108893 0.69 0.52336
Target:  5'- gCCGCGcuGcCCGCCGgCGAGCGgggcGCGGg -3'
miRNA:   3'- gGGCGUucC-GGUGGCgGCUUGC----CGCC- -5'
23844 3' -60.9 NC_005261.1 + 108707 0.68 0.619787
Target:  5'- gUCGaCGAGcGCCACgGCgaaGAGCGcGCGGg -3'
miRNA:   3'- gGGC-GUUC-CGGUGgCGg--CUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 108644 0.71 0.433227
Target:  5'- cUCCGCgAAGGCCuCCGCCagcccCGGCGu -3'
miRNA:   3'- -GGGCG-UUCCGGuGGCGGcuu--GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 108537 0.71 0.441844
Target:  5'- uCUCGguAGGCCagcGCCGCCGAcACGcGCa- -3'
miRNA:   3'- -GGGCguUCCGG---UGGCGGCU-UGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 108342 0.83 0.080114
Target:  5'- aCCCGCGccaGGGCCGCCGCCGucGCaGGCGc -3'
miRNA:   3'- -GGGCGU---UCCGGUGGCGGCu-UG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 108159 0.71 0.441844
Target:  5'- gCCUGCAGcGCguCCGCCaGGGCGcGCGGc -3'
miRNA:   3'- -GGGCGUUcCGguGGCGG-CUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 107965 0.68 0.590489
Target:  5'- gCCGCGGGGCCAU-GCag--UGGCGGa -3'
miRNA:   3'- gGGCGUUCCGGUGgCGgcuuGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.