Results 81 - 100 of 737 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 35960 | 0.78 | 0.165336 |
Target: 5'- gCCCgGCcAGGCCgcucgGCCGCUGuAGCGGCGGc -3' miRNA: 3'- -GGG-CGuUCCGG-----UGGCGGC-UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 68686 | 0.78 | 0.165336 |
Target: 5'- gCCGCGuggGGGCCGgCGCgGAcgACGGCGGc -3' miRNA: 3'- gGGCGU---UCCGGUgGCGgCU--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 38624 | 0.78 | 0.168168 |
Target: 5'- gCCGCGgccgAGcCCGCCGCCGAcggugacggugaaaGCGGCGGg -3' miRNA: 3'- gGGCGU----UCcGGUGGCGGCU--------------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 13065 | 0.78 | 0.169395 |
Target: 5'- cCCUGCcGGGCgCGuCCGCCGGcccgucggcggGCGGCGGg -3' miRNA: 3'- -GGGCGuUCCG-GU-GGCGGCU-----------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 121405 | 0.78 | 0.169395 |
Target: 5'- gCCCgaguGCGAcGGCUGCCGCCGccgcuacggGGCGGCGGg -3' miRNA: 3'- -GGG----CGUU-CCGGUGGCGGC---------UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 72747 | 0.78 | 0.173545 |
Target: 5'- gCCCGCAuggcGGGCCGCaUGCCcagcACGGCGGc -3' miRNA: 3'- -GGGCGU----UCCGGUG-GCGGcu--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 12518 | 0.77 | 0.177356 |
Target: 5'- aCCgCGCGGGGCCccgcgccGCCGCCGAauuuauacGCGGgGGc -3' miRNA: 3'- -GG-GCGUUCCGG-------UGGCGGCU--------UGCCgCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 107675 | 0.78 | 0.153676 |
Target: 5'- cCCCGCcGGGCguuGCCGCC--GCGGCGGg -3' miRNA: 3'- -GGGCGuUCCGg--UGGCGGcuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 33363 | 0.78 | 0.153676 |
Target: 5'- gCCGCcGGGCCG-CGCCGGGCuGCGGg -3' miRNA: 3'- gGGCGuUCCGGUgGCGGCUUGcCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 126995 | 0.79 | 0.149958 |
Target: 5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3' miRNA: 3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 92219 | 0.79 | 0.132569 |
Target: 5'- gCCgGCGucgucGGCC-CCGCCGAGCGcGCGGa -3' miRNA: 3'- -GGgCGUu----CCGGuGGCGGCUUGC-CGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 59483 | 0.79 | 0.135891 |
Target: 5'- gCCgGCGcGGCCGCCGCgCcAGCGGCGGc -3' miRNA: 3'- -GGgCGUuCCGGUGGCG-GcUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 109324 | 0.79 | 0.135891 |
Target: 5'- cUCCGCGAGcGCgGCCGCgGGGuCGGCGGc -3' miRNA: 3'- -GGGCGUUC-CGgUGGCGgCUU-GCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 91714 | 0.79 | 0.13929 |
Target: 5'- gCUGCAAGGCCGgcUCGCC--GCGGCGGg -3' miRNA: 3'- gGGCGUUCCGGU--GGCGGcuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 75453 | 0.79 | 0.142766 |
Target: 5'- uCCCaCGGGGCCAguuccaggCGCCGGGCGGCGGc -3' miRNA: 3'- -GGGcGUUCCGGUg-------GCGGCUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 55157 | 0.79 | 0.142766 |
Target: 5'- gCgCGCGAGcGCCGCCGCCGGcggcucgcGgGGCGGa -3' miRNA: 3'- -GgGCGUUC-CGGUGGCGGCU--------UgCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 4375 | 0.79 | 0.145963 |
Target: 5'- gCCCGCGccgccgaAGcGCaCGCgGCCGGGCGGCGGc -3' miRNA: 3'- -GGGCGU-------UC-CG-GUGgCGGCUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 21783 | 0.79 | 0.145963 |
Target: 5'- gCCGCGgcgcGGGCCgccgcaGCCGCCGGccgggccgggcccGCGGCGGg -3' miRNA: 3'- gGGCGU----UCCGG------UGGCGGCU-------------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 98298 | 0.79 | 0.146322 |
Target: 5'- gUCCGCGgccucgggggcgGGcGCCGCCGCC-AGCGGCGGc -3' miRNA: 3'- -GGGCGU------------UC-CGGUGGCGGcUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 1484 | 0.79 | 0.146322 |
Target: 5'- gCCGCGcagaAGGCCACCGCC--GCGGcCGGc -3' miRNA: 3'- gGGCGU----UCCGGUGGCGGcuUGCC-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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