miRNA display CGI


Results 101 - 120 of 737 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 33701 0.77 0.191058
Target:  5'- uCgCGCGGGGcCCGCUGCaCGAGgGGCGGu -3'
miRNA:   3'- -GgGCGUUCC-GGUGGCG-GCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 95007 0.77 0.191058
Target:  5'- cCCUGCGGGgcgggcuauaaaGCCGCCGCCG-GCGGCGc -3'
miRNA:   3'- -GGGCGUUC------------CGGUGGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 132396 0.77 0.191058
Target:  5'- uCCC-CGAGGCCGCCGCCGAcgccUGGCc- -3'
miRNA:   3'- -GGGcGUUCCGGUGGCGGCUu---GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 100219 0.77 0.191058
Target:  5'- cCCCGCGuagagcucGGCCACCGCCGGGC-GCa- -3'
miRNA:   3'- -GGGCGUu-------CCGGUGGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 3151 0.77 0.195672
Target:  5'- cCCCGUccGAGGCC-CCGgCG-GCGGCGGc -3'
miRNA:   3'- -GGGCG--UUCCGGuGGCgGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13065 0.78 0.169395
Target:  5'- cCCUGCcGGGCgCGuCCGCCGGcccgucggcggGCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCG-GU-GGCGGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 38624 0.78 0.168168
Target:  5'- gCCGCGgccgAGcCCGCCGCCGAcggugacggugaaaGCGGCGGg -3'
miRNA:   3'- gGGCGU----UCcGGUGGCGGCU--------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 55157 0.79 0.142766
Target:  5'- gCgCGCGAGcGCCGCCGCCGGcggcucgcGgGGCGGa -3'
miRNA:   3'- -GgGCGUUC-CGGUGGCGGCU--------UgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 4375 0.79 0.145963
Target:  5'- gCCCGCGccgccgaAGcGCaCGCgGCCGGGCGGCGGc -3'
miRNA:   3'- -GGGCGU-------UC-CG-GUGgCGGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 21783 0.79 0.145963
Target:  5'- gCCGCGgcgcGGGCCgccgcaGCCGCCGGccgggccgggcccGCGGCGGg -3'
miRNA:   3'- gGGCGU----UCCGG------UGGCGGCU-------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 98298 0.79 0.146322
Target:  5'- gUCCGCGgccucgggggcgGGcGCCGCCGCC-AGCGGCGGc -3'
miRNA:   3'- -GGGCGU------------UC-CGGUGGCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1484 0.79 0.146322
Target:  5'- gCCGCGcagaAGGCCACCGCC--GCGGcCGGc -3'
miRNA:   3'- gGGCGU----UCCGGUGGCGGcuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 126995 0.79 0.149958
Target:  5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3'
miRNA:   3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 33363 0.78 0.153676
Target:  5'- gCCGCcGGGCCG-CGCCGGGCuGCGGg -3'
miRNA:   3'- gGGCGuUCCGGUgGCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 107675 0.78 0.153676
Target:  5'- cCCCGCcGGGCguuGCCGCC--GCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGg--UGGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 31102 0.78 0.157477
Target:  5'- gCCGCccggcGGCCccGCCGCCG-ACGGCGGc -3'
miRNA:   3'- gGGCGuu---CCGG--UGGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 86836 0.78 0.163736
Target:  5'- gCCGCcaucaccGAGGCCagccggcgcucaacGCCGCCGGgcGCGGCGGc -3'
miRNA:   3'- gGGCG-------UUCCGG--------------UGGCGGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1292 0.78 0.165336
Target:  5'- gCCgGCGGGGCUcCCGUCGccGGCGGCGGc -3'
miRNA:   3'- -GGgCGUUCCGGuGGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 35960 0.78 0.165336
Target:  5'- gCCCgGCcAGGCCgcucgGCCGCUGuAGCGGCGGc -3'
miRNA:   3'- -GGG-CGuUCCGG-----UGGCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 68686 0.78 0.165336
Target:  5'- gCCGCGuggGGGCCGgCGCgGAcgACGGCGGc -3'
miRNA:   3'- gGGCGU---UCCGGUgGCGgCU--UGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.