miRNA display CGI


Results 121 - 140 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 115852 0.76 0.209608
Target:  5'- gCCCGCGcGGCCcCCGCCGAGgcgcgccCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGuGGCGGCUU-------GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 39441 0.76 0.210103
Target:  5'- gUCCGCAGGGCCccgaGCCuCCGcGCGGCGcGg -3'
miRNA:   3'- -GGGCGUUCCGG----UGGcGGCuUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 114354 0.77 0.186539
Target:  5'- -gCGCGuGGCCGCgGCCGAGuCGGUGGc -3'
miRNA:   3'- ggGCGUuCCGGUGgCGGCUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 52344 0.77 0.186539
Target:  5'- gCCCGCcgcGCUGCCGCCGGagccggagcccGCGGCGGc -3'
miRNA:   3'- -GGGCGuucCGGUGGCGGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 98038 0.77 0.182115
Target:  5'- gCCGCGGuacuGGCgGCCG-CGGGCGGCGGg -3'
miRNA:   3'- gGGCGUU----CCGgUGGCgGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126995 0.79 0.149958
Target:  5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3'
miRNA:   3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 33363 0.78 0.153676
Target:  5'- gCCGCcGGGCCG-CGCCGGGCuGCGGg -3'
miRNA:   3'- gGGCGuUCCGGUgGCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 107675 0.78 0.153676
Target:  5'- cCCCGCcGGGCguuGCCGCC--GCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGg--UGGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 31102 0.78 0.157477
Target:  5'- gCCGCccggcGGCCccGCCGCCG-ACGGCGGc -3'
miRNA:   3'- gGGCGuu---CCGG--UGGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 86836 0.78 0.163736
Target:  5'- gCCGCcaucaccGAGGCCagccggcgcucaacGCCGCCGGgcGCGGCGGc -3'
miRNA:   3'- gGGCG-------UUCCGG--------------UGGCGGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1292 0.78 0.165336
Target:  5'- gCCgGCGGGGCUcCCGUCGccGGCGGCGGc -3'
miRNA:   3'- -GGgCGUUCCGGuGGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 35960 0.78 0.165336
Target:  5'- gCCCgGCcAGGCCgcucgGCCGCUGuAGCGGCGGc -3'
miRNA:   3'- -GGG-CGuUCCGG-----UGGCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 68686 0.78 0.165336
Target:  5'- gCCGCGuggGGGCCGgCGCgGAcgACGGCGGc -3'
miRNA:   3'- gGGCGU---UCCGGUgGCGgCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 38624 0.78 0.168168
Target:  5'- gCCGCGgccgAGcCCGCCGCCGAcggugacggugaaaGCGGCGGg -3'
miRNA:   3'- gGGCGU----UCcGGUGGCGGCU--------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13065 0.78 0.169395
Target:  5'- cCCUGCcGGGCgCGuCCGCCGGcccgucggcggGCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCG-GU-GGCGGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 121405 0.78 0.169395
Target:  5'- gCCCgaguGCGAcGGCUGCCGCCGccgcuacggGGCGGCGGg -3'
miRNA:   3'- -GGG----CGUU-CCGGUGGCGGC---------UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 72747 0.78 0.173545
Target:  5'- gCCCGCAuggcGGGCCGCaUGCCcagcACGGCGGc -3'
miRNA:   3'- -GGGCGU----UCCGGUG-GCGGcu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 12518 0.77 0.177356
Target:  5'- aCCgCGCGGGGCCccgcgccGCCGCCGAauuuauacGCGGgGGc -3'
miRNA:   3'- -GG-GCGUUCCGG-------UGGCGGCU--------UGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 105219 0.77 0.181241
Target:  5'- gCCGCGcGGGCCGCgGCCGcggccgugaucuGCGGCGGc -3'
miRNA:   3'- gGGCGU-UCCGGUGgCGGCu-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 104678 0.77 0.182115
Target:  5'- gCUGCGgcagcgccuGGGCCACCGCCccgaaGAGCGGCuGGa -3'
miRNA:   3'- gGGCGU---------UCCGGUGGCGG-----CUUGCCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.