Results 61 - 80 of 737 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 16287 | 0.8 | 0.123048 |
Target: 5'- gCCCGgGGGGgCGCCGUCGGgcccaGCGGCGGc -3' miRNA: 3'- -GGGCgUUCCgGUGGCGGCU-----UGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 127303 | 0.8 | 0.123048 |
Target: 5'- cCCCGCcggcuggcgguGGGGCCcuGCCGCCcgcgggggccgGAGCGGCGGg -3' miRNA: 3'- -GGGCG-----------UUCCGG--UGGCGG-----------CUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 55157 | 0.79 | 0.142766 |
Target: 5'- gCgCGCGAGcGCCGCCGCCGGcggcucgcGgGGCGGa -3' miRNA: 3'- -GgGCGUUC-CGGUGGCGGCU--------UgCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 4375 | 0.79 | 0.145963 |
Target: 5'- gCCCGCGccgccgaAGcGCaCGCgGCCGGGCGGCGGc -3' miRNA: 3'- -GGGCGU-------UC-CG-GUGgCGGCUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 21783 | 0.79 | 0.145963 |
Target: 5'- gCCGCGgcgcGGGCCgccgcaGCCGCCGGccgggccgggcccGCGGCGGg -3' miRNA: 3'- gGGCGU----UCCGG------UGGCGGCU-------------UGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 98298 | 0.79 | 0.146322 |
Target: 5'- gUCCGCGgccucgggggcgGGcGCCGCCGCC-AGCGGCGGc -3' miRNA: 3'- -GGGCGU------------UC-CGGUGGCGGcUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 1484 | 0.79 | 0.146322 |
Target: 5'- gCCGCGcagaAGGCCACCGCC--GCGGcCGGc -3' miRNA: 3'- gGGCGU----UCCGGUGGCGGcuUGCC-GCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 126995 | 0.79 | 0.149958 |
Target: 5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3' miRNA: 3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 33363 | 0.78 | 0.153676 |
Target: 5'- gCCGCcGGGCCG-CGCCGGGCuGCGGg -3' miRNA: 3'- gGGCGuUCCGGUgGCGGCUUGcCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 107675 | 0.78 | 0.153676 |
Target: 5'- cCCCGCcGGGCguuGCCGCC--GCGGCGGg -3' miRNA: 3'- -GGGCGuUCCGg--UGGCGGcuUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 75453 | 0.79 | 0.142766 |
Target: 5'- uCCCaCGGGGCCAguuccaggCGCCGGGCGGCGGc -3' miRNA: 3'- -GGGcGUUCCGGUg-------GCGGCUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 91714 | 0.79 | 0.13929 |
Target: 5'- gCUGCAAGGCCGgcUCGCC--GCGGCGGg -3' miRNA: 3'- gGGCGUUCCGGU--GGCGGcuUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 97675 | 0.8 | 0.126149 |
Target: 5'- gUCCGCGGGGCUugggcgggGCUGCCgGGGCGGUGGg -3' miRNA: 3'- -GGGCGUUCCGG--------UGGCGG-CUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 132904 | 0.8 | 0.126149 |
Target: 5'- gCCGC-GGGCgG-CGCCGAGCGGCGGc -3' miRNA: 3'- gGGCGuUCCGgUgGCGGCUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 134345 | 0.8 | 0.129002 |
Target: 5'- aCCGCAAGcccccgcGCCGCCGCgCGGGgGGCGGc -3' miRNA: 3'- gGGCGUUC-------CGGUGGCG-GCUUgCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 62422 | 0.8 | 0.129322 |
Target: 5'- gCCCGcCGAGGCCAgcgcgagccggUCGCCGGgccccagcaGCGGCGGa -3' miRNA: 3'- -GGGC-GUUCCGGU-----------GGCGGCU---------UGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 49236 | 0.79 | 0.132569 |
Target: 5'- gCgCGCAGgucGGCCGCCGCCGcGGCGGCGu -3' miRNA: 3'- -GgGCGUU---CCGGUGGCGGC-UUGCCGCc -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 92219 | 0.79 | 0.132569 |
Target: 5'- gCCgGCGucgucGGCC-CCGCCGAGCGcGCGGa -3' miRNA: 3'- -GGgCGUu----CCGGuGGCGGCUUGC-CGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 59483 | 0.79 | 0.135891 |
Target: 5'- gCCgGCGcGGCCGCCGCgCcAGCGGCGGc -3' miRNA: 3'- -GGgCGUuCCGGUGGCG-GcUUGCCGCC- -5' |
|||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 109324 | 0.79 | 0.135891 |
Target: 5'- cUCCGCGAGcGCgGCCGCgGGGuCGGCGGc -3' miRNA: 3'- -GGGCGUUC-CGgUGGCGgCUU-GCCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home