Results 121 - 140 of 737 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 115852 | 0.76 | 0.209608 |
Target: 5'- gCCCGCGcGGCCcCCGCCGAGgcgcgccCGGCa- -3' miRNA: 3'- -GGGCGUuCCGGuGGCGGCUU-------GCCGcc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 39441 | 0.76 | 0.210103 |
Target: 5'- gUCCGCAGGGCCccgaGCCuCCGcGCGGCGcGg -3' miRNA: 3'- -GGGCGUUCCGG----UGGcGGCuUGCCGC-C- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 114354 | 0.77 | 0.186539 |
Target: 5'- -gCGCGuGGCCGCgGCCGAGuCGGUGGc -3' miRNA: 3'- ggGCGUuCCGGUGgCGGCUU-GCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 52344 | 0.77 | 0.186539 |
Target: 5'- gCCCGCcgcGCUGCCGCCGGagccggagcccGCGGCGGc -3' miRNA: 3'- -GGGCGuucCGGUGGCGGCU-----------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 98038 | 0.77 | 0.182115 |
Target: 5'- gCCGCGGuacuGGCgGCCG-CGGGCGGCGGg -3' miRNA: 3'- gGGCGUU----CCGgUGGCgGCUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 126995 | 0.79 | 0.149958 |
Target: 5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3' miRNA: 3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 33363 | 0.78 | 0.153676 |
Target: 5'- gCCGCcGGGCCG-CGCCGGGCuGCGGg -3' miRNA: 3'- gGGCGuUCCGGUgGCGGCUUGcCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 107675 | 0.78 | 0.153676 |
Target: 5'- cCCCGCcGGGCguuGCCGCC--GCGGCGGg -3' miRNA: 3'- -GGGCGuUCCGg--UGGCGGcuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 31102 | 0.78 | 0.157477 |
Target: 5'- gCCGCccggcGGCCccGCCGCCG-ACGGCGGc -3' miRNA: 3'- gGGCGuu---CCGG--UGGCGGCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 86836 | 0.78 | 0.163736 |
Target: 5'- gCCGCcaucaccGAGGCCagccggcgcucaacGCCGCCGGgcGCGGCGGc -3' miRNA: 3'- gGGCG-------UUCCGG--------------UGGCGGCU--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 1292 | 0.78 | 0.165336 |
Target: 5'- gCCgGCGGGGCUcCCGUCGccGGCGGCGGc -3' miRNA: 3'- -GGgCGUUCCGGuGGCGGC--UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 35960 | 0.78 | 0.165336 |
Target: 5'- gCCCgGCcAGGCCgcucgGCCGCUGuAGCGGCGGc -3' miRNA: 3'- -GGG-CGuUCCGG-----UGGCGGC-UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 68686 | 0.78 | 0.165336 |
Target: 5'- gCCGCGuggGGGCCGgCGCgGAcgACGGCGGc -3' miRNA: 3'- gGGCGU---UCCGGUgGCGgCU--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 38624 | 0.78 | 0.168168 |
Target: 5'- gCCGCGgccgAGcCCGCCGCCGAcggugacggugaaaGCGGCGGg -3' miRNA: 3'- gGGCGU----UCcGGUGGCGGCU--------------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 13065 | 0.78 | 0.169395 |
Target: 5'- cCCUGCcGGGCgCGuCCGCCGGcccgucggcggGCGGCGGg -3' miRNA: 3'- -GGGCGuUCCG-GU-GGCGGCU-----------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 121405 | 0.78 | 0.169395 |
Target: 5'- gCCCgaguGCGAcGGCUGCCGCCGccgcuacggGGCGGCGGg -3' miRNA: 3'- -GGG----CGUU-CCGGUGGCGGC---------UUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 72747 | 0.78 | 0.173545 |
Target: 5'- gCCCGCAuggcGGGCCGCaUGCCcagcACGGCGGc -3' miRNA: 3'- -GGGCGU----UCCGGUG-GCGGcu--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 12518 | 0.77 | 0.177356 |
Target: 5'- aCCgCGCGGGGCCccgcgccGCCGCCGAauuuauacGCGGgGGc -3' miRNA: 3'- -GG-GCGUUCCGG-------UGGCGGCU--------UGCCgCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 105219 | 0.77 | 0.181241 |
Target: 5'- gCCGCGcGGGCCGCgGCCGcggccgugaucuGCGGCGGc -3' miRNA: 3'- gGGCGU-UCCGGUGgCGGCu-----------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 104678 | 0.77 | 0.182115 |
Target: 5'- gCUGCGgcagcgccuGGGCCACCGCCccgaaGAGCGGCuGGa -3' miRNA: 3'- gGGCGU---------UCCGGUGGCGG-----CUUGCCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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