miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23845 3' -51.2 NC_005261.1 + 27377 0.67 0.978957
Target:  5'- aGGCCGgUGg---GCAgGGGGUacGCGGCc -3'
miRNA:   3'- -CCGGCgACaugaUGUaCCUCA--UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 52967 0.67 0.976508
Target:  5'- cGCCGCgccgGUGCggcgccgGCAggcGGGG-GCGGCg -3'
miRNA:   3'- cCGGCGa---CAUGa------UGUa--CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 75935 0.67 0.973857
Target:  5'- uGGcCCGCgUGUACgagGCcugccccgagGUGGAGgucacGCAGCu -3'
miRNA:   3'- -CC-GGCG-ACAUGa--UG----------UACCUCa----UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 51354 0.67 0.970994
Target:  5'- -aCCGCUGgGCUguccgGCGcGGAGUACGcGCa -3'
miRNA:   3'- ccGGCGACaUGA-----UGUaCCUCAUGU-CG- -5'
23845 3' -51.2 NC_005261.1 + 31780 0.67 0.970994
Target:  5'- cGCCGCgGUGCUGCccGcGGcGCAGUg -3'
miRNA:   3'- cCGGCGaCAUGAUGuaCcUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 62223 0.67 0.970396
Target:  5'- cGGCCGCgucugcgcccucgcgGUGCUGCAcguccggcgucaccUGGua-GCGGCg -3'
miRNA:   3'- -CCGGCGa--------------CAUGAUGU--------------ACCucaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 76125 0.68 0.964608
Target:  5'- cGCCGCgccgGCgcccguCGUGGAGgucgugGCGGCg -3'
miRNA:   3'- cCGGCGaca-UGau----GUACCUCa-----UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 59460 0.68 0.961071
Target:  5'- cGGCCGCg-----GCGUcGGGGgGCAGCg -3'
miRNA:   3'- -CCGGCGacaugaUGUA-CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 18323 0.68 0.961071
Target:  5'- aGGucCCGCUGUcgUACAggccGGGGcGCAGCa -3'
miRNA:   3'- -CC--GGCGACAugAUGUa---CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 89429 0.68 0.958835
Target:  5'- cGGCCGCcGgGCUccccgcgcccgccguGC-UGGAGUuugACAGCg -3'
miRNA:   3'- -CCGGCGaCaUGA---------------UGuACCUCA---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 68672 0.68 0.957296
Target:  5'- cGCCGCcggcGUccGCcGCGUGGGGgcCGGCg -3'
miRNA:   3'- cCGGCGa---CA--UGaUGUACCUCauGUCG- -5'
23845 3' -51.2 NC_005261.1 + 13605 0.68 0.957296
Target:  5'- aGUCGCccggggUGUAC-ACGUGGgagcGGUACGGCu -3'
miRNA:   3'- cCGGCG------ACAUGaUGUACC----UCAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 51967 0.68 0.953279
Target:  5'- cGCCGCcGcGCUGC-UGGAccGCGGCg -3'
miRNA:   3'- cCGGCGaCaUGAUGuACCUcaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 3963 0.68 0.953279
Target:  5'- cGCCGCaGgcuCUGCA-GGAGgaACAGCu -3'
miRNA:   3'- cCGGCGaCau-GAUGUaCCUCa-UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 104020 0.68 0.953279
Target:  5'- cGCgCGCUGUACUGCGcgccgcgcaGGAaGUACuGCc -3'
miRNA:   3'- cCG-GCGACAUGAUGUa--------CCU-CAUGuCG- -5'
23845 3' -51.2 NC_005261.1 + 23617 0.69 0.949015
Target:  5'- cGCCGCUGccgggGCgcgGCG-GGGGUcggGCGGCu -3'
miRNA:   3'- cCGGCGACa----UGa--UGUaCCUCA---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 119785 0.69 0.9445
Target:  5'- cGGUCGC-GUACcGCAgcgcGGAGcuggGCGGCa -3'
miRNA:   3'- -CCGGCGaCAUGaUGUa---CCUCa---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 67963 0.69 0.9445
Target:  5'- cGGCCGCc--GCgGCgAUGGAGUucgcuuaccGCAGCg -3'
miRNA:   3'- -CCGGCGacaUGaUG-UACCUCA---------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 88741 0.69 0.9445
Target:  5'- gGGCCaGCUGguggACgcCAUGGug-GCGGCg -3'
miRNA:   3'- -CCGG-CGACa---UGauGUACCucaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 97927 0.69 0.943096
Target:  5'- -cCCGCUGUACUggccgccagcuccgGCGgcaacgagGGAGgugGCGGCg -3'
miRNA:   3'- ccGGCGACAUGA--------------UGUa-------CCUCa--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.