miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23845 5' -54.6 NC_005261.1 + 129531 0.66 0.907895
Target:  5'- -cGAGGCGCg-CGGGcUAC-GCCGCa- -3'
miRNA:   3'- uuCUUCGUGaaGCCC-AUGaCGGCGau -5'
23845 5' -54.6 NC_005261.1 + 45371 0.66 0.907895
Target:  5'- cGAGGAGCGCgUCGGG----GCCGCc- -3'
miRNA:   3'- -UUCUUCGUGaAGCCCaugaCGGCGau -5'
23845 5' -54.6 NC_005261.1 + 121035 0.66 0.901395
Target:  5'- gGAGAAGCGCcgccacacgUCGcGGUugUGgCGCg- -3'
miRNA:   3'- -UUCUUCGUGa--------AGC-CCAugACgGCGau -5'
23845 5' -54.6 NC_005261.1 + 105373 0.66 0.898724
Target:  5'- cAGGcGGCGCgcgCGGGUGCgcgcugaccacgcGCCGCUc -3'
miRNA:   3'- -UUCuUCGUGaa-GCCCAUGa------------CGGCGAu -5'
23845 5' -54.6 NC_005261.1 + 123889 0.66 0.894643
Target:  5'- ----cGCACUUCGcGGaagGCcGCCGCUGu -3'
miRNA:   3'- uucuuCGUGAAGC-CCa--UGaCGGCGAU- -5'
23845 5' -54.6 NC_005261.1 + 62830 0.66 0.894643
Target:  5'- -cGggGCACcggCGGGggACUGgCGCg- -3'
miRNA:   3'- uuCuuCGUGaa-GCCCa-UGACgGCGau -5'
23845 5' -54.6 NC_005261.1 + 16172 0.66 0.894643
Target:  5'- uAGGggGCGCgggcguggCGGGgguggGCggggGCCGCg- -3'
miRNA:   3'- -UUCuuCGUGaa------GCCCa----UGa---CGGCGau -5'
23845 5' -54.6 NC_005261.1 + 62194 0.66 0.894643
Target:  5'- gAAGAccaugugcAGCGCga-GGGUGCgcgcgGCCGCg- -3'
miRNA:   3'- -UUCU--------UCGUGaagCCCAUGa----CGGCGau -5'
23845 5' -54.6 NC_005261.1 + 3549 0.66 0.887641
Target:  5'- -cGcAGCGCggCGGGcGCggcGCCGCUAa -3'
miRNA:   3'- uuCuUCGUGaaGCCCaUGa--CGGCGAU- -5'
23845 5' -54.6 NC_005261.1 + 31056 0.67 0.865185
Target:  5'- ---cAGCGCggCGGGaGCcGCCGCUGc -3'
miRNA:   3'- uucuUCGUGaaGCCCaUGaCGGCGAU- -5'
23845 5' -54.6 NC_005261.1 + 114219 0.67 0.852358
Target:  5'- cGAGGugguGCACUcgCGGGUguacagcgccauucaGCUGCUGCUc -3'
miRNA:   3'- -UUCUu---CGUGAa-GCCCA---------------UGACGGCGAu -5'
23845 5' -54.6 NC_005261.1 + 87124 0.67 0.849064
Target:  5'- uAGAAGgGCcgCGGGUACgcgaGCUGCUc -3'
miRNA:   3'- uUCUUCgUGaaGCCCAUGa---CGGCGAu -5'
23845 5' -54.6 NC_005261.1 + 56260 0.67 0.840678
Target:  5'- --uGGGCACgcugcaCGGGUACUGCgaGCUGg -3'
miRNA:   3'- uucUUCGUGaa----GCCCAUGACGg-CGAU- -5'
23845 5' -54.6 NC_005261.1 + 55108 0.68 0.81432
Target:  5'- aAAGAccgGGCACc-CGGGccgcucaACUGCCGCUAg -3'
miRNA:   3'- -UUCU---UCGUGaaGCCCa------UGACGGCGAU- -5'
23845 5' -54.6 NC_005261.1 + 127654 0.69 0.736844
Target:  5'- cGGGggGCGCgcgggUUCGGGgcgggacgGCggcgGCCGCUGc -3'
miRNA:   3'- -UUCuuCGUG-----AAGCCCa-------UGa---CGGCGAU- -5'
23845 5' -54.6 NC_005261.1 + 38194 0.71 0.663671
Target:  5'- uGGgcGCGCcgCGGcGUGCUGCUGCUc -3'
miRNA:   3'- uUCuuCGUGaaGCC-CAUGACGGCGAu -5'
23845 5' -54.6 NC_005261.1 + 125375 0.71 0.642365
Target:  5'- aGAGggGCGCUggaaCGGGUGCgUGCgGUa- -3'
miRNA:   3'- -UUCuuCGUGAa---GCCCAUG-ACGgCGau -5'
23845 5' -54.6 NC_005261.1 + 131725 0.72 0.578519
Target:  5'- -cGgcGCGCUUCgguGGGUGCUGCaCGCg- -3'
miRNA:   3'- uuCuuCGUGAAG---CCCAUGACG-GCGau -5'
23845 5' -54.6 NC_005261.1 + 59074 0.72 0.578519
Target:  5'- gGAG-AGCGCgcgCGGGUGC-GCCGCg- -3'
miRNA:   3'- -UUCuUCGUGaa-GCCCAUGaCGGCGau -5'
23845 5' -54.6 NC_005261.1 + 29674 0.72 0.557484
Target:  5'- cAGAAcGCGCUgUGGGcGCUGCCGCa- -3'
miRNA:   3'- uUCUU-CGUGAaGCCCaUGACGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.