Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23847 | 3' | -56.4 | NC_005261.1 | + | 34221 | 0.68 | 0.803015 |
Target: 5'- gGACGC-GGAcgCagacgCGGCCGucaucuGGGGCGa -3' miRNA: 3'- aCUGCGaCCUuaGa----GCCGGC------UUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 33847 | 0.68 | 0.794022 |
Target: 5'- cUGGCGCUGGg--Cg-GGCCGGgaGGGCc -3' miRNA: 3'- -ACUGCGACCuuaGagCCGGCU--UCCGc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 32372 | 0.71 | 0.634341 |
Target: 5'- aGACGCUGGugcaggcgCGGCgCGgcGGCGu -3' miRNA: 3'- aCUGCGACCuuaga---GCCG-GCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 32078 | 0.74 | 0.446159 |
Target: 5'- cGGCGCUGGGG-CUCGgggagccggacuucGCgGAGGGCGa -3' miRNA: 3'- aCUGCGACCUUaGAGC--------------CGgCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 31579 | 0.67 | 0.85343 |
Target: 5'- gGGCGCgccGGAcgugagcgcgCUCGGCgCGcAGGGCGu -3' miRNA: 3'- aCUGCGa--CCUua--------GAGCCG-GC-UUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 30790 | 0.67 | 0.820527 |
Target: 5'- cGGCGgUGGAGgugCUgGgGCCGGAGGa- -3' miRNA: 3'- aCUGCgACCUUa--GAgC-CGGCUUCCgc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 30203 | 0.73 | 0.476795 |
Target: 5'- -cGCGCUGGAGg--CGGCCGcgcuGGCGg -3' miRNA: 3'- acUGCGACCUUagaGCCGGCuu--CCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 28785 | 0.68 | 0.803015 |
Target: 5'- cGGCGC-GGGcgCUcgCGGCCGc-GGCGg -3' miRNA: 3'- aCUGCGaCCUuaGA--GCCGGCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 28744 | 0.7 | 0.656872 |
Target: 5'- cGAgGCcccagaGGAcgCcgCGGCCGggGGCGc -3' miRNA: 3'- aCUgCGa-----CCUuaGa-GCCGGCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 23628 | 0.69 | 0.737301 |
Target: 5'- gGGCGCggcgGGggUCgggCGGCUgGAAGGg- -3' miRNA: 3'- aCUGCGa---CCuuAGa--GCCGG-CUUCCgc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 22992 | 0.68 | 0.766199 |
Target: 5'- cGGCGgaGGAAgaggggGGcCCGGAGGCGg -3' miRNA: 3'- aCUGCgaCCUUagag--CC-GGCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 22786 | 0.68 | 0.766199 |
Target: 5'- --cCGCgagaagGGggUUgucgCGGCCGgcGGCGg -3' miRNA: 3'- acuGCGa-----CCuuAGa---GCCGGCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 21207 | 0.7 | 0.687424 |
Target: 5'- gGACGCUGGcc-C-CGGCCGcgacGGCGg -3' miRNA: 3'- aCUGCGACCuuaGaGCCGGCuu--CCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 20726 | 0.73 | 0.495862 |
Target: 5'- -cGCGCUGGGG-CUCGGCCGuuucacguguGGGUGu -3' miRNA: 3'- acUGCGACCUUaGAGCCGGCu---------UCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 19096 | 0.67 | 0.844683 |
Target: 5'- gUGGCGUUGGAaguugcggGUCagcCGGUCGGuggggcuAGGCGg -3' miRNA: 3'- -ACUGCGACCU--------UAGa--GCCGGCU-------UCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 14946 | 0.73 | 0.515267 |
Target: 5'- cUGGCGCUGGAAgcgagCgggCGuGCCuGGGGCGa -3' miRNA: 3'- -ACUGCGACCUUa----Ga--GC-CGGcUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 13678 | 0.66 | 0.883125 |
Target: 5'- gGGCGCgGGGcgCgCGGgCGuGGGGCGg -3' miRNA: 3'- aCUGCGaCCUuaGaGCCgGC-UUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 13096 | 0.67 | 0.82903 |
Target: 5'- gGGCgGC-GGg--CUCGGCuCGggGGCGu -3' miRNA: 3'- aCUG-CGaCCuuaGAGCCG-GCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 12483 | 0.66 | 0.868703 |
Target: 5'- cGACGCugugUGGAcUCUCcauGGCCccccGGGCGa -3' miRNA: 3'- aCUGCG----ACCUuAGAG---CCGGcu--UCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 5890 | 0.68 | 0.794022 |
Target: 5'- cUGGCucgGCUGGcuagCUCGGCCGGccGGCu -3' miRNA: 3'- -ACUG---CGACCuua-GAGCCGGCUu-CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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