Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23847 | 3' | -56.4 | NC_005261.1 | + | 95470 | 0.7 | 0.646637 |
Target: 5'- cGGCGCUGGAgaagAUCaaGGCCcgcGGCGg -3' miRNA: 3'- aCUGCGACCU----UAGagCCGGcuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 34490 | 0.7 | 0.656872 |
Target: 5'- gGGUGCUGGAGUg--GGUCGAGGGCGc -3' miRNA: 3'- aCUGCGACCUUAgagCCGGCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 105140 | 0.69 | 0.707576 |
Target: 5'- cGGCGCgcgcaGGuccUCgCGGCuCGAGGGCGg -3' miRNA: 3'- aCUGCGa----CCuu-AGaGCCG-GCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 64497 | 0.69 | 0.71756 |
Target: 5'- gUGGCGCgGGug-CUCGGggcCCGcGGGCGg -3' miRNA: 3'- -ACUGCGaCCuuaGAGCC---GGCuUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 98711 | 0.69 | 0.71756 |
Target: 5'- cUGGgGCcGGggUC-CGGCCuuGggGGCa -3' miRNA: 3'- -ACUgCGaCCuuAGaGCCGG--CuuCCGc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 23628 | 0.69 | 0.737301 |
Target: 5'- gGGCGCggcgGGggUCgggCGGCUgGAAGGg- -3' miRNA: 3'- aCUGCGa---CCuuAGa--GCCGG-CUUCCgc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 91245 | 0.69 | 0.747038 |
Target: 5'- cGGCGCUGGAca-UCGGCgacuuuguuaUGAcGGCGg -3' miRNA: 3'- aCUGCGACCUuagAGCCG----------GCUuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 40289 | 0.68 | 0.756674 |
Target: 5'- aGACGaugUGGAcguUCUCGucGCgGAGGGCGg -3' miRNA: 3'- aCUGCg--ACCUu--AGAGC--CGgCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 57867 | 0.68 | 0.756674 |
Target: 5'- cGGCGCUcgggucGGGAagUCGGCCGGcacgGGGaCGg -3' miRNA: 3'- aCUGCGA------CCUUagAGCCGGCU----UCC-GC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 74475 | 0.68 | 0.762403 |
Target: 5'- cGGCGCggcgugccugggcGGGAUCUCGGCgCucuucGGGGCGg -3' miRNA: 3'- aCUGCGa------------CCUUAGAGCCG-Gc----UUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 70648 | 0.69 | 0.707576 |
Target: 5'- cGGCGCUGaGGuUCggcgccgCGGCCGcGGGCc -3' miRNA: 3'- aCUGCGAC-CUuAGa------GCCGGCuUCCGc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 43818 | 0.69 | 0.707576 |
Target: 5'- gGGCGCgcccuccgUGGAGaagcugCUCGG-CGAGGGCGa -3' miRNA: 3'- aCUGCG--------ACCUUa-----GAGCCgGCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 56136 | 0.7 | 0.656872 |
Target: 5'- gGGCGggGGGcgCg-GGCCGAGGGUGg -3' miRNA: 3'- aCUGCgaCCUuaGagCCGGCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 28744 | 0.7 | 0.656872 |
Target: 5'- cGAgGCcccagaGGAcgCcgCGGCCGggGGCGc -3' miRNA: 3'- aCUgCGa-----CCUuaGa-GCCGGCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 2425 | 0.7 | 0.664026 |
Target: 5'- cGGCgGCgGGccgcGAUCUCGGCCagcgccucggggucGAAGGCGa -3' miRNA: 3'- aCUG-CGaCC----UUAGAGCCGG--------------CUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 97150 | 0.7 | 0.677274 |
Target: 5'- aGGCGCUGGcgccggCcCGGCCGGcugggucgcGGGCGc -3' miRNA: 3'- aCUGCGACCuua---GaGCCGGCU---------UCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 21207 | 0.7 | 0.687424 |
Target: 5'- gGACGCUGGcc-C-CGGCCGcgacGGCGg -3' miRNA: 3'- aCUGCGACCuuaGaGCCGGCuu--CCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 80897 | 0.7 | 0.687424 |
Target: 5'- cGGCGCcucccaGGggUCcucgucgCGGUCGAAGGCc -3' miRNA: 3'- aCUGCGa-----CCuuAGa------GCCGGCUUCCGc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 121814 | 0.7 | 0.697527 |
Target: 5'- cGugGCUGGGcUCUgCgGGCCGccgcGGCGg -3' miRNA: 3'- aCugCGACCUuAGA-G-CCGGCuu--CCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 98118 | 0.69 | 0.703564 |
Target: 5'- cGAgGCUGGGGaCgccgcggcaccggCGGCCGucGGCGg -3' miRNA: 3'- aCUgCGACCUUaGa------------GCCGGCuuCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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