miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 30563 0.67 0.999308
Target:  5'- cGCCGCCGgggccUCGGaCGggGAcggGGACGg- -3'
miRNA:   3'- -CGGUGGU-----AGUC-GCuuCUua-UUUGCgg -5'
23847 5' -47.6 NC_005261.1 + 40267 0.67 0.999145
Target:  5'- gGCgGCCG-CGGCGggGcucAGUAGACGa- -3'
miRNA:   3'- -CGgUGGUaGUCGCuuC---UUAUUUGCgg -5'
23847 5' -47.6 NC_005261.1 + 19381 0.67 0.998351
Target:  5'- aGCCagGCCGUagUAGCGggGcucGGUGAucggcccgugugccGCGCCg -3'
miRNA:   3'- -CGG--UGGUA--GUCGCuuC---UUAUU--------------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 39787 0.67 0.999308
Target:  5'- cGUCGCCGgggggCGGCGcGGccgccGGCGCCa -3'
miRNA:   3'- -CGGUGGUa----GUCGCuUCuuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 66502 0.67 0.999308
Target:  5'- cGgCACCAgCAGCGAcauuGgcGGCGCCu -3'
miRNA:   3'- -CgGUGGUaGUCGCUucu-UauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 63069 0.67 0.999308
Target:  5'- cGUCGCUGgcgcaCAGCGgcGggU--ACGCCu -3'
miRNA:   3'- -CGGUGGUa----GUCGCuuCuuAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 115091 0.67 0.998949
Target:  5'- aGCC-CCAUCAGCGugucGGccucggcGGCGCUg -3'
miRNA:   3'- -CGGuGGUAGUCGCu---UCuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 89853 0.67 0.999308
Target:  5'- gGCCGCggcguCAUCGGCGAguacugcauucAGGAcucGGCGCUg -3'
miRNA:   3'- -CGGUG-----GUAGUCGCU-----------UCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 119649 0.67 0.998949
Target:  5'- cGCCACCggCGGCGc-------GCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50778 0.67 0.999308
Target:  5'- cGCaCACCG-CGGCGgcGGccgccccGGCGCCg -3'
miRNA:   3'- -CG-GUGGUaGUCGCuuCUuau----UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 71953 0.67 0.998717
Target:  5'- cCCACUggcGUCGGCGcGGGGcgcgGAGCGCg -3'
miRNA:   3'- cGGUGG---UAGUCGCuUCUUa---UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 103917 0.67 0.998717
Target:  5'- cGCCGCCAggucgggcgCGGCGucugccAGACGCUg -3'
miRNA:   3'- -CGGUGGUa--------GUCGCuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 116141 0.67 0.998717
Target:  5'- uCCGCag-CAGCGAgaGGAAgcAGCGCg -3'
miRNA:   3'- cGGUGguaGUCGCU--UCUUauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 5438 0.67 0.999145
Target:  5'- cGCgGCCG-CGGCGgcGGcaacAGCGCCc -3'
miRNA:   3'- -CGgUGGUaGUCGCuuCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34873 0.67 0.999214
Target:  5'- aCCGCCAUCGaCGAcacggagucggagucGGAGUcGGACGCg -3'
miRNA:   3'- cGGUGGUAGUcGCU---------------UCUUA-UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 44930 0.67 0.999145
Target:  5'- aGCCGCCGaggagaguUCGGCGcugGAGAGccugcugcgGGACGCg -3'
miRNA:   3'- -CGGUGGU--------AGUCGC---UUCUUa--------UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 25259 0.67 0.999308
Target:  5'- uCCGCCAUUAgauuuuuucgccGCGAGGGGgcgcggucuGugGCCg -3'
miRNA:   3'- cGGUGGUAGU------------CGCUUCUUau-------UugCGG- -5'
23847 5' -47.6 NC_005261.1 + 97938 0.67 0.998949
Target:  5'- gGCCGCCAgcucCGGCGGcaacgaGGGAgguGGCGgCg -3'
miRNA:   3'- -CGGUGGUa---GUCGCU------UCUUau-UUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 101091 0.67 0.998949
Target:  5'- gGCCGCCugCAGCGcGGccgcgcGCGCCu -3'
miRNA:   3'- -CGGUGGuaGUCGCuUCuuauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 119156 0.67 0.998949
Target:  5'- uCCGCCcgCGcGCGA-GAGUuuuuCGCCg -3'
miRNA:   3'- cGGUGGuaGU-CGCUuCUUAuuu-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.