Results 101 - 120 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23847 | 5' | -47.6 | NC_005261.1 | + | 16262 | 0.67 | 0.999308 |
Target: 5'- gGCCGCCGgggccgggcuUCGGCucgcccGggGG---GGCGCCg -3' miRNA: 3'- -CGGUGGU----------AGUCG------CuuCUuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 44930 | 0.67 | 0.999145 |
Target: 5'- aGCCGCCGaggagaguUCGGCGcugGAGAGccugcugcgGGACGCg -3' miRNA: 3'- -CGGUGGU--------AGUCGC---UUCUUa--------UUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 5438 | 0.67 | 0.999145 |
Target: 5'- cGCgGCCG-CGGCGgcGGcaacAGCGCCc -3' miRNA: 3'- -CGgUGGUaGUCGCuuCUuau-UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 66706 | 0.67 | 0.998928 |
Target: 5'- gGCCGCgcUCAGCGA-------GCGCCg -3' miRNA: 3'- -CGGUGguAGUCGCUucuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 115907 | 0.67 | 0.998717 |
Target: 5'- cGCCGUCGUCAGCGccGGc----CGCCg -3' miRNA: 3'- -CGGUGGUAGUCGCuuCUuauuuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 57995 | 0.67 | 0.998949 |
Target: 5'- cGCCGCCAaaaAGCGccAGGAcGUGGAagUGCCg -3' miRNA: 3'- -CGGUGGUag-UCGC--UUCU-UAUUU--GCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 51030 | 0.67 | 0.998949 |
Target: 5'- cGCCACC--CGGCGcuGuuccuggAGGCGCCu -3' miRNA: 3'- -CGGUGGuaGUCGCuuCuua----UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 25259 | 0.67 | 0.999308 |
Target: 5'- uCCGCCAUUAgauuuuuucgccGCGAGGGGgcgcggucuGugGCCg -3' miRNA: 3'- cGGUGGUAGU------------CGCUUCUUau-------UugCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 106273 | 0.67 | 0.999108 |
Target: 5'- uGCCGCCGggCGGCccgugc-AAACGCCg -3' miRNA: 3'- -CGGUGGUa-GUCGcuucuuaUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 127378 | 0.67 | 0.998949 |
Target: 5'- uGUCGuuGgcggCGGCGAGGAGcccGGCGCCc -3' miRNA: 3'- -CGGUggUa---GUCGCUUCUUau-UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 94623 | 0.67 | 0.998949 |
Target: 5'- cGCCGCCGcCGGCGccGucGUcgGCGCg -3' miRNA: 3'- -CGGUGGUaGUCGCuuCu-UAuuUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 77762 | 0.67 | 0.998949 |
Target: 5'- cGCaGCCGgggCGGCGggGAcgAcGAgGCCu -3' miRNA: 3'- -CGgUGGUa--GUCGCuuCUuaU-UUgCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 122902 | 0.67 | 0.998717 |
Target: 5'- cGCCuCCGggaCGGCGuuGGAgcgcACGCCg -3' miRNA: 3'- -CGGuGGUa--GUCGCuuCUUauu-UGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 119156 | 0.67 | 0.998949 |
Target: 5'- uCCGCCcgCGcGCGA-GAGUuuuuCGCCg -3' miRNA: 3'- cGGUGGuaGU-CGCUuCUUAuuu-GCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 36180 | 0.67 | 0.999145 |
Target: 5'- uGCCGCCggCAGCGc---AUGcGCGCUu -3' miRNA: 3'- -CGGUGGuaGUCGCuucuUAUuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 85763 | 0.67 | 0.999145 |
Target: 5'- gGCCAgCAcCgAGCGccGGAAcagGAACGCCg -3' miRNA: 3'- -CGGUgGUaG-UCGCu-UCUUa--UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 77717 | 0.67 | 0.999145 |
Target: 5'- cGCCGCCcccCAGCcAAGc---GGCGCCg -3' miRNA: 3'- -CGGUGGua-GUCGcUUCuuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 40267 | 0.67 | 0.999145 |
Target: 5'- gGCgGCCG-CGGCGggGcucAGUAGACGa- -3' miRNA: 3'- -CGgUGGUaGUCGCuuC---UUAUUUGCgg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 118592 | 0.67 | 0.999145 |
Target: 5'- cGCCGCCG-CcGCGGAGcuc--GCGCUg -3' miRNA: 3'- -CGGUGGUaGuCGCUUCuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 113457 | 0.67 | 0.999145 |
Target: 5'- gGUCACgAUgAGCGgcGAGcugcuGCGCCc -3' miRNA: 3'- -CGGUGgUAgUCGCuuCUUauu--UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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