miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 44930 0.67 0.999145
Target:  5'- aGCCGCCGaggagaguUCGGCGcugGAGAGccugcugcgGGACGCg -3'
miRNA:   3'- -CGGUGGU--------AGUCGC---UUCUUa--------UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 89853 0.67 0.999308
Target:  5'- gGCCGCggcguCAUCGGCGAguacugcauucAGGAcucGGCGCUg -3'
miRNA:   3'- -CGGUG-----GUAGUCGCU-----------UCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 66502 0.67 0.999308
Target:  5'- cGgCACCAgCAGCGAcauuGgcGGCGCCu -3'
miRNA:   3'- -CgGUGGUaGUCGCUucu-UauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 118592 0.67 0.999145
Target:  5'- cGCCGCCG-CcGCGGAGcuc--GCGCUg -3'
miRNA:   3'- -CGGUGGUaGuCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 39787 0.67 0.999308
Target:  5'- cGUCGCCGgggggCGGCGcGGccgccGGCGCCa -3'
miRNA:   3'- -CGGUGGUa----GUCGCuUCuuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38488 0.68 0.996211
Target:  5'- gGCCGCgG-CGGCGucGAcugGAGCGUCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1796 0.68 0.996211
Target:  5'- aGCCGCag-CGGCGGcgccccGGggUAGA-GCCg -3'
miRNA:   3'- -CGGUGguaGUCGCU------UCuuAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 53125 0.68 0.996211
Target:  5'- cGCCGCCAaCAGgGcGGcGUAcgcgcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCgCuUCuUAUu----UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 102336 0.68 0.996211
Target:  5'- aGCCgcGCCAgcUCGGCcgcgucGAAGGcgGAGCGCg -3'
miRNA:   3'- -CGG--UGGU--AGUCG------CUUCUuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 127836 0.68 0.996211
Target:  5'- gGCCGCgAgCAGCGGAcGGGgcggucgcGGCGCCa -3'
miRNA:   3'- -CGGUGgUaGUCGCUU-CUUau------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59491 0.68 0.998119
Target:  5'- gGCCGCCGcgcCAGCGgcGGcgGucgcacgcGCGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUuaUu-------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 128799 0.68 0.998119
Target:  5'- cGCCcggGCCcgCGGCGggGcuc--GCGCUg -3'
miRNA:   3'- -CGG---UGGuaGUCGCuuCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 104453 0.68 0.998119
Target:  5'- cGCCGCCGcCGGCG--------GCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 102450 0.68 0.998119
Target:  5'- cGCCGCCcggccUCGGCGcgc---AGGCGCCg -3'
miRNA:   3'- -CGGUGGu----AGUCGCuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101550 0.68 0.998119
Target:  5'- gGCCGCCAcgaccUCGcCGAGGAu---GCGCUc -3'
miRNA:   3'- -CGGUGGU-----AGUcGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 72889 0.68 0.998119
Target:  5'- cCCGCCGcCGGgGuAGAGcucgcggcacuUGAGCGCCg -3'
miRNA:   3'- cGGUGGUaGUCgCuUCUU-----------AUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 52590 0.68 0.998119
Target:  5'- aCCACCAcaggcguggcgaUCAGCaGAacGGGGacGGCGCCu -3'
miRNA:   3'- cGGUGGU------------AGUCG-CU--UCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 4897 0.68 0.998119
Target:  5'- gGCCGCCucggcuUCGGCGgcGGcugccucCGCCg -3'
miRNA:   3'- -CGGUGGu-----AGUCGCuuCUuauuu--GCGG- -5'
23847 5' -47.6 NC_005261.1 + 95756 0.68 0.995955
Target:  5'- cGCCGCCGggGGCGccGGGAGccucgcgcgcuGCGCCg -3'
miRNA:   3'- -CGGUGGUagUCGC--UUCUUauu--------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 82850 0.68 0.998119
Target:  5'- cGCCuCCAaguugcCAGCGAAGGcgGcgacGGCGCUg -3'
miRNA:   3'- -CGGuGGUa-----GUCGCUUCUuaU----UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.