miRNA display CGI


Results 81 - 100 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 125536 0.72 0.97207
Target:  5'- cGCCGCCcgCagGGCGGcgccAGAGgccuuACGCCa -3'
miRNA:   3'- -CGGUGGuaG--UCGCU----UCUUauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 85633 0.72 0.965698
Target:  5'- aGCCGCCGUUgAGC-AGGuccaugAAGCGCCg -3'
miRNA:   3'- -CGGUGGUAG-UCGcUUCuua---UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 22828 0.72 0.965698
Target:  5'- cGCCGCCGUUGGCGccgggcucgGGGAAgaacACGUCg -3'
miRNA:   3'- -CGGUGGUAGUCGC---------UUCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43068 0.72 0.957578
Target:  5'- aGCCACCAUCcuaAGCacaacgcUAAACGCCg -3'
miRNA:   3'- -CGGUGGUAG---UCGcuucuu-AUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12968 0.72 0.958366
Target:  5'- cGCgCACCccagaCAGCGAGGGccgcGACGCCg -3'
miRNA:   3'- -CG-GUGGua---GUCGCUUCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 71831 0.72 0.958366
Target:  5'- gGCCACaCcgCGGCGAAGuc----CGCCa -3'
miRNA:   3'- -CGGUG-GuaGUCGCUUCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 55252 0.72 0.958366
Target:  5'- aGCCGCC----GCGAGGAGgucuGCGCCc -3'
miRNA:   3'- -CGGUGGuaguCGCUUCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 127013 0.72 0.958366
Target:  5'- cGCCGCaggCGGCGGcccgagcagGGAGUcgucGAACGCCu -3'
miRNA:   3'- -CGGUGguaGUCGCU---------UCUUA----UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 37849 0.72 0.962155
Target:  5'- cGCCGCCGacuUCGGCGucccc--GACGCCu -3'
miRNA:   3'- -CGGUGGU---AGUCGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 49626 0.72 0.962155
Target:  5'- aGCuCGCCGUCgacgAGCGAGcGGAU--GCGCCc -3'
miRNA:   3'- -CG-GUGGUAG----UCGCUU-CUUAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 64870 0.72 0.962155
Target:  5'- cGUC-CCAgaUCAGCGgcGGcggGAGCGCCg -3'
miRNA:   3'- -CGGuGGU--AGUCGCuuCUua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 106392 0.72 0.963601
Target:  5'- cGCCGCUGUCGGCGAcauccgcgcGGCGCUg -3'
miRNA:   3'- -CGGUGGUAGUCGCUucuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 8805 0.72 0.965698
Target:  5'- aGCCGCCGagGGCuuGAAGG---GGCGCCc -3'
miRNA:   3'- -CGGUGGUagUCG--CUUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 33003 0.71 0.974914
Target:  5'- gGCCgACCGgggaAGgGggGAGggGGGCGCCg -3'
miRNA:   3'- -CGG-UGGUag--UCgCuuCUUa-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 132079 0.71 0.974914
Target:  5'- gGCCGCCGUCGccgcugccGCGGAGGGcggccgcGACGCg -3'
miRNA:   3'- -CGGUGGUAGU--------CGCUUCUUau-----UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 99672 0.71 0.974914
Target:  5'- aCCGUCGUCAGCGcgcugcccGGGAUGAggcGCGCCa -3'
miRNA:   3'- cGGUGGUAGUCGCu-------UCUUAUU---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50429 0.71 0.974914
Target:  5'- aGCCGCuCGUgCAGCGugcgcguGAAgcuGCGCCg -3'
miRNA:   3'- -CGGUG-GUA-GUCGCuu-----CUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1408 0.71 0.974914
Target:  5'- gGCCGCgGcggCGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGgUa--GUCGCuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50585 0.71 0.974363
Target:  5'- uCCGCCGcgAGCGggGAGggcagggagacgGGGCGCCc -3'
miRNA:   3'- cGGUGGUagUCGCuuCUUa-----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 80538 0.71 0.974914
Target:  5'- gGCCACCGUCAcGUGcuGggU--GCGCa -3'
miRNA:   3'- -CGGUGGUAGU-CGCuuCuuAuuUGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.