miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 59350 0.72 0.965698
Target:  5'- cGCCGCCGUCGccaCGAGGGugu--CGCCc -3'
miRNA:   3'- -CGGUGGUAGUc--GCUUCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 104377 0.72 0.965698
Target:  5'- aGCCGCCGgccggaGGCcGAGAGgc-GCGCCa -3'
miRNA:   3'- -CGGUGGUag----UCGcUUCUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 85633 0.72 0.965698
Target:  5'- aGCCGCCGUUgAGC-AGGuccaugAAGCGCCg -3'
miRNA:   3'- -CGGUGGUAG-UCGcUUCuua---UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 22828 0.72 0.965698
Target:  5'- cGCCGCCGUUGGCGccgggcucgGGGAAgaacACGUCg -3'
miRNA:   3'- -CGGUGGUAGUCGC---------UUCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 8805 0.72 0.965698
Target:  5'- aGCCGCCGagGGCuuGAAGG---GGCGCCc -3'
miRNA:   3'- -CGGUGGUagUCG--CUUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135241 0.72 0.969
Target:  5'- cGCCGCCGUCuuuGCGGGcgcgcGGAUGGACaucaugcgGCCu -3'
miRNA:   3'- -CGGUGGUAGu--CGCUU-----CUUAUUUG--------CGG- -5'
23847 5' -47.6 NC_005261.1 + 98857 0.72 0.969
Target:  5'- cGCCGCUugcggCGGCGAAGuccgGGACGUUg -3'
miRNA:   3'- -CGGUGGua---GUCGCUUCuua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 92426 0.72 0.969
Target:  5'- gGCCACCGUCcGCGAgaggucgaacGGGAgcaccacGGGCGUCg -3'
miRNA:   3'- -CGGUGGUAGuCGCU----------UCUUa------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 86678 0.72 0.969
Target:  5'- cCCACCAgccCGGCGAGGcggcccacGUAcGCGCCc -3'
miRNA:   3'- cGGUGGUa--GUCGCUUCu-------UAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 81458 0.72 0.969
Target:  5'- cGCCGCCAgCAGC-AGGGccc-ACGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGcUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59458 0.72 0.969
Target:  5'- cGCgGCCG-CGGCGucgGGGGgcAGCGCCg -3'
miRNA:   3'- -CGgUGGUaGUCGCu--UCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 134472 0.72 0.97207
Target:  5'- gGCCGCCAUCgugGGCGgcGucgucGCGCUg -3'
miRNA:   3'- -CGGUGGUAG---UCGCuuCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 125536 0.72 0.97207
Target:  5'- cGCCGCCcgCagGGCGGcgccAGAGgccuuACGCCa -3'
miRNA:   3'- -CGGUGGuaG--UCGCU----UCUUauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50585 0.71 0.974363
Target:  5'- uCCGCCGcgAGCGggGAGggcagggagacgGGGCGCCc -3'
miRNA:   3'- cGGUGGUagUCGCuuCUUa-----------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1762 0.71 0.974363
Target:  5'- gGCCACCGUgUAGCGcacguu-GGCGCCg -3'
miRNA:   3'- -CGGUGGUA-GUCGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50429 0.71 0.974914
Target:  5'- aGCCGCuCGUgCAGCGugcgcguGAAgcuGCGCCg -3'
miRNA:   3'- -CGGUG-GUA-GUCGCuu-----CUUauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 99672 0.71 0.974914
Target:  5'- aCCGUCGUCAGCGcgcugcccGGGAUGAggcGCGCCa -3'
miRNA:   3'- cGGUGGUAGUCGCu-------UCUUAUU---UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 132079 0.71 0.974914
Target:  5'- gGCCGCCGUCGccgcugccGCGGAGGGcggccgcGACGCg -3'
miRNA:   3'- -CGGUGGUAGU--------CGCUUCUUau-----UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 33003 0.71 0.974914
Target:  5'- gGCCgACCGgggaAGgGggGAGggGGGCGCCg -3'
miRNA:   3'- -CGG-UGGUag--UCgCuuCUUa-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 80538 0.71 0.974914
Target:  5'- gGCCACCGUCAcGUGcuGggU--GCGCa -3'
miRNA:   3'- -CGGUGGUAGU-CGCuuCuuAuuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.